Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 220 | 1.11 | 0.00104 |
Target: 5'- gAAGCCACUCAACGCCUGACAAUCCGCg -3' miRNA: 3'- -UUCGGUGAGUUGCGGACUGUUAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 1588 | 0.7 | 0.532425 |
Target: 5'- cAAGCCGCUCAAuCGCC-GACuuaCCGa -3' miRNA: 3'- -UUCGGUGAGUU-GCGGaCUGuuaGGCg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 1718 | 0.67 | 0.743698 |
Target: 5'- -uGCUugUUGGCGCgaggGAgAGUCCGCg -3' miRNA: 3'- uuCGGugAGUUGCGga--CUgUUAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 3540 | 0.67 | 0.722075 |
Target: 5'- -cGCCGCguUCAGgGCCgcGGCAcgCUGCa -3' miRNA: 3'- uuCGGUG--AGUUgCGGa-CUGUuaGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 3851 | 0.7 | 0.573243 |
Target: 5'- cGGCCAcCUCAGCGCUUucacgcagcucgucGuacCAGUCCGCc -3' miRNA: 3'- uUCGGU-GAGUUGCGGA--------------Cu--GUUAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 7646 | 0.7 | 0.521565 |
Target: 5'- cAGCCAaUCAACGCCUGAaaggggCGCg -3' miRNA: 3'- uUCGGUgAGUUGCGGACUguuag-GCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 8882 | 0.7 | 0.532425 |
Target: 5'- --cCCACUCGGCcuugGCCUGcGCGAucUCCGCg -3' miRNA: 3'- uucGGUGAGUUG----CGGAC-UGUU--AGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 9548 | 0.66 | 0.795464 |
Target: 5'- aGGGCaCGUUCAuACGCCUGAgCGgcGUCUGCa -3' miRNA: 3'- -UUCG-GUGAGU-UGCGGACU-GU--UAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 9695 | 0.71 | 0.493754 |
Target: 5'- uGGCCAUUCGGCGUCUGAUgugaagacgaucaugGAUUCGg -3' miRNA: 3'- uUCGGUGAGUUGCGGACUG---------------UUAGGCg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 11913 | 0.7 | 0.565454 |
Target: 5'- uGGGCCGgUCggUGCCggugGGCAAcCCGUc -3' miRNA: 3'- -UUCGGUgAGuuGCGGa---CUGUUaGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 12128 | 0.66 | 0.782376 |
Target: 5'- -uGCCGCaacggcgggcaguuUCGGCGCC-GGCGGUcaggCCGCg -3' miRNA: 3'- uuCGGUG--------------AGUUGCGGaCUGUUA----GGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 15055 | 0.66 | 0.795464 |
Target: 5'- -cGCaCGCUCAAUGCUuuUGACGcUCCa- -3' miRNA: 3'- uuCG-GUGAGUUGCGG--ACUGUuAGGcg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 17223 | 0.67 | 0.700077 |
Target: 5'- -cGUUAUUCGGaucucUGCCUGAgGAUCUGCg -3' miRNA: 3'- uuCGGUGAGUU-----GCGGACUgUUAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 19950 | 0.68 | 0.688968 |
Target: 5'- cGGCCAUgcccugagCGACGaUCUGGuCGAUCUGCg -3' miRNA: 3'- uUCGGUGa-------GUUGC-GGACU-GUUAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 20254 | 0.67 | 0.754338 |
Target: 5'- -cGCUGCUCGuugaaaACGCCUGA----CCGCa -3' miRNA: 3'- uuCGGUGAGU------UGCGGACUguuaGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 21238 | 0.67 | 0.700077 |
Target: 5'- -cGCgGCgcggaaCAACGCCUGACcacccuuagCCGCg -3' miRNA: 3'- uuCGgUGa-----GUUGCGGACUGuua------GGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 23293 | 0.66 | 0.795464 |
Target: 5'- -uGCCGCaccUCccGCGCCUGACGAcaggacaagcaaUCCGa -3' miRNA: 3'- uuCGGUG---AGu-UGCGGACUGUU------------AGGCg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 24336 | 0.67 | 0.73294 |
Target: 5'- -cGCCACcggCAGCGgCgGACAAggcgCCGUg -3' miRNA: 3'- uuCGGUGa--GUUGCgGaCUGUUa---GGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 33158 | 0.67 | 0.700077 |
Target: 5'- uAGCCAC-CAACGCCacACAAaCCGg -3' miRNA: 3'- uUCGGUGaGUUGCGGacUGUUaGGCg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 33650 | 0.67 | 0.743698 |
Target: 5'- cGAGCCGUUUGACaccuCCUGGCcuUCCGCu -3' miRNA: 3'- -UUCGGUGAGUUGc---GGACUGuuAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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