miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19554 5' -53.4 NC_004686.1 + 220 1.11 0.00104
Target:  5'- gAAGCCACUCAACGCCUGACAAUCCGCg -3'
miRNA:   3'- -UUCGGUGAGUUGCGGACUGUUAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 56047 0.74 0.354485
Target:  5'- cGGCCGCgu--CGCCUGGCGGUUCGg -3'
miRNA:   3'- uUCGGUGaguuGCGGACUGUUAGGCg -5'
19554 5' -53.4 NC_004686.1 + 55178 0.73 0.363225
Target:  5'- cAGCCGC-CGACGCCcaccaAAUCCGCa -3'
miRNA:   3'- uUCGGUGaGUUGCGGacug-UUAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 39921 0.73 0.399651
Target:  5'- -cGCCAUUCAGCGCaCUGccgGCGGUCCcaGCc -3'
miRNA:   3'- uuCGGUGAGUUGCG-GAC---UGUUAGG--CG- -5'
19554 5' -53.4 NC_004686.1 + 54493 0.72 0.418719
Target:  5'- aGGGCCACUU--CGCCUG-CGAgCCGCc -3'
miRNA:   3'- -UUCGGUGAGuuGCGGACuGUUaGGCG- -5'
19554 5' -53.4 NC_004686.1 + 51966 0.72 0.458454
Target:  5'- -uGCC--UCGACGCCgucGACAucAUCCGCg -3'
miRNA:   3'- uuCGGugAGUUGCGGa--CUGU--UAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 9695 0.71 0.493754
Target:  5'- uGGCCAUUCGGCGUCUGAUgugaagacgaucaugGAUUCGg -3'
miRNA:   3'- uUCGGUGAGUUGCGGACUG---------------UUAGGCg -5'
19554 5' -53.4 NC_004686.1 + 7646 0.7 0.521565
Target:  5'- cAGCCAaUCAACGCCUGAaaggggCGCg -3'
miRNA:   3'- uUCGGUgAGUUGCGGACUguuag-GCG- -5'
19554 5' -53.4 NC_004686.1 + 36208 0.7 0.529158
Target:  5'- cGGGCCugUCAuuugGCUUGGCGAcggggauuuggguuUCCGCg -3'
miRNA:   3'- -UUCGGugAGUug--CGGACUGUU--------------AGGCG- -5'
19554 5' -53.4 NC_004686.1 + 8882 0.7 0.532425
Target:  5'- --cCCACUCGGCcuugGCCUGcGCGAucUCCGCg -3'
miRNA:   3'- uucGGUGAGUUG----CGGAC-UGUU--AGGCG- -5'
19554 5' -53.4 NC_004686.1 + 1588 0.7 0.532425
Target:  5'- cAAGCCGCUCAAuCGCC-GACuuaCCGa -3'
miRNA:   3'- -UUCGGUGAGUU-GCGGaCUGuuaGGCg -5'
19554 5' -53.4 NC_004686.1 + 53727 0.7 0.532425
Target:  5'- -cGCCAUUCAACGCCaGAucuaCAAUCagauCGCg -3'
miRNA:   3'- uuCGGUGAGUUGCGGaCU----GUUAG----GCG- -5'
19554 5' -53.4 NC_004686.1 + 47017 0.7 0.554377
Target:  5'- aGAGCCACUguugauCGgCUGGCAGUCCa- -3'
miRNA:   3'- -UUCGGUGAguu---GCgGACUGUUAGGcg -5'
19554 5' -53.4 NC_004686.1 + 11913 0.7 0.565454
Target:  5'- uGGGCCGgUCggUGCCggugGGCAAcCCGUc -3'
miRNA:   3'- -UUCGGUgAGuuGCGGa---CUGUUaGGCG- -5'
19554 5' -53.4 NC_004686.1 + 3851 0.7 0.573243
Target:  5'- cGGCCAcCUCAGCGCUUucacgcagcucgucGuacCAGUCCGCc -3'
miRNA:   3'- uUCGGU-GAGUUGCGGA--------------Cu--GUUAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 43303 0.69 0.598992
Target:  5'- gAAGCCACUCggUGaUCUcuaGACAGucUCCGUg -3'
miRNA:   3'- -UUCGGUGAGuuGC-GGA---CUGUU--AGGCG- -5'
19554 5' -53.4 NC_004686.1 + 44008 0.69 0.610243
Target:  5'- cAAGCCACUCggUGaUCUcuaGACAGucUCCGUg -3'
miRNA:   3'- -UUCGGUGAGuuGC-GGA---CUGUU--AGGCG- -5'
19554 5' -53.4 NC_004686.1 + 34073 0.68 0.644075
Target:  5'- aAGGCCGC-CAACGgCUGGucCGAUCCa- -3'
miRNA:   3'- -UUCGGUGaGUUGCgGACU--GUUAGGcg -5'
19554 5' -53.4 NC_004686.1 + 39662 0.68 0.655343
Target:  5'- --uCCACgaCAACGCC--ACGAUCCGCu -3'
miRNA:   3'- uucGGUGa-GUUGCGGacUGUUAGGCG- -5'
19554 5' -53.4 NC_004686.1 + 38405 0.68 0.688968
Target:  5'- -cGCUGCUCAuCGCCgcgGGCAucAUCgGCc -3'
miRNA:   3'- uuCGGUGAGUuGCGGa--CUGU--UAGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.