Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 56047 | 0.74 | 0.354485 |
Target: 5'- cGGCCGCgu--CGCCUGGCGGUUCGg -3' miRNA: 3'- uUCGGUGaguuGCGGACUGUUAGGCg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 33158 | 0.67 | 0.700077 |
Target: 5'- uAGCCAC-CAACGCCacACAAaCCGg -3' miRNA: 3'- uUCGGUGaGUUGCGGacUGUUaGGCg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 17223 | 0.67 | 0.700077 |
Target: 5'- -cGUUAUUCGGaucucUGCCUGAgGAUCUGCg -3' miRNA: 3'- uuCGGUGAGUU-----GCGGACUgUUAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 38820 | 0.67 | 0.710017 |
Target: 5'- cGGCCACUacgucaaCGACGCCgcccGCAagAUCUGCu -3' miRNA: 3'- uUCGGUGA-------GUUGCGGac--UGU--UAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 3540 | 0.67 | 0.722075 |
Target: 5'- -cGCCGCguUCAGgGCCgcGGCAcgCUGCa -3' miRNA: 3'- uuCGGUG--AGUUgCGGa-CUGUuaGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 24336 | 0.67 | 0.73294 |
Target: 5'- -cGCCACcggCAGCGgCgGACAAggcgCCGUg -3' miRNA: 3'- uuCGGUGa--GUUGCgGaCUGUUa---GGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 1718 | 0.67 | 0.743698 |
Target: 5'- -uGCUugUUGGCGCgaggGAgAGUCCGCg -3' miRNA: 3'- uuCGGugAGUUGCGga--CUgUUAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 33650 | 0.67 | 0.743698 |
Target: 5'- cGAGCCGUUUGACaccuCCUGGCcuUCCGCu -3' miRNA: 3'- -UUCGGUGAGUUGc---GGACUGuuAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 12128 | 0.66 | 0.782376 |
Target: 5'- -uGCCGCaacggcgggcaguuUCGGCGCC-GGCGGUcaggCCGCg -3' miRNA: 3'- uuCGGUG--------------AGUUGCGGaCUGUUA----GGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 38405 | 0.68 | 0.688968 |
Target: 5'- -cGCUGCUCAuCGCCgcgGGCAucAUCgGCc -3' miRNA: 3'- uuCGGUGAGUuGCGGa--CUGU--UAGgCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 11913 | 0.7 | 0.565454 |
Target: 5'- uGGGCCGgUCggUGCCggugGGCAAcCCGUc -3' miRNA: 3'- -UUCGGUgAGuuGCGGa---CUGUUaGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 55178 | 0.73 | 0.363225 |
Target: 5'- cAGCCGC-CGACGCCcaccaAAUCCGCa -3' miRNA: 3'- uUCGGUGaGUUGCGGacug-UUAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 54493 | 0.72 | 0.418719 |
Target: 5'- aGGGCCACUU--CGCCUG-CGAgCCGCc -3' miRNA: 3'- -UUCGGUGAGuuGCGGACuGUUaGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 51966 | 0.72 | 0.458454 |
Target: 5'- -uGCC--UCGACGCCgucGACAucAUCCGCg -3' miRNA: 3'- uuCGGugAGUUGCGGa--CUGU--UAGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 9695 | 0.71 | 0.493754 |
Target: 5'- uGGCCAUUCGGCGUCUGAUgugaagacgaucaugGAUUCGg -3' miRNA: 3'- uUCGGUGAGUUGCGGACUG---------------UUAGGCg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 7646 | 0.7 | 0.521565 |
Target: 5'- cAGCCAaUCAACGCCUGAaaggggCGCg -3' miRNA: 3'- uUCGGUgAGUUGCGGACUguuag-GCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 36208 | 0.7 | 0.529158 |
Target: 5'- cGGGCCugUCAuuugGCUUGGCGAcggggauuuggguuUCCGCg -3' miRNA: 3'- -UUCGGugAGUug--CGGACUGUU--------------AGGCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 53727 | 0.7 | 0.532425 |
Target: 5'- -cGCCAUUCAACGCCaGAucuaCAAUCagauCGCg -3' miRNA: 3'- uuCGGUGAGUUGCGGaCU----GUUAG----GCG- -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 47017 | 0.7 | 0.554377 |
Target: 5'- aGAGCCACUguugauCGgCUGGCAGUCCa- -3' miRNA: 3'- -UUCGGUGAguu---GCgGACUGUUAGGcg -5' |
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19554 | 5' | -53.4 | NC_004686.1 | + | 15055 | 0.66 | 0.795464 |
Target: 5'- -cGCaCGCUCAAUGCUuuUGACGcUCCa- -3' miRNA: 3'- uuCG-GUGAGUUGCGG--ACUGUuAGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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