Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19564 | 3' | -59.7 | NC_004686.1 | + | 51085 | 0.77 | 0.089577 |
Target: 5'- aGCGGCGGCaUUCUCGucCGCCGCgAg -3' miRNA: 3'- gCGCCGCCGaAGGAGCuuGCGGUGgU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 5271 | 0.66 | 0.503427 |
Target: 5'- uGCGGCucugucggguucgccGGCgaagaUCCUCGA-CaCCACCAa -3' miRNA: 3'- gCGCCG---------------CCGa----AGGAGCUuGcGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 38639 | 0.66 | 0.489424 |
Target: 5'- --aGGUGGCgUUCUUCGu-CGCCGCUg -3' miRNA: 3'- gcgCCGCCG-AAGGAGCuuGCGGUGGu -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 18831 | 0.66 | 0.469743 |
Target: 5'- gGCGGCGGUgcgCgaCGAGa-CCGCCAa -3' miRNA: 3'- gCGCCGCCGaa-GgaGCUUgcGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 21847 | 0.66 | 0.469743 |
Target: 5'- gCGCgGGCGGCggCUcCGGACGgCGCUc -3' miRNA: 3'- -GCG-CCGCCGaaGGaGCUUGCgGUGGu -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 7009 | 0.66 | 0.469743 |
Target: 5'- uGUGGUGGCg--UUCGAGgaaGCCGCCGc -3' miRNA: 3'- gCGCCGCCGaagGAGCUUg--CGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 47307 | 0.66 | 0.468769 |
Target: 5'- uGCGccgccuacgacccGUGGUUUCCgcagcCGAaccGCGCCACCGu -3' miRNA: 3'- gCGC-------------CGCCGAAGGa----GCU---UGCGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 51528 | 0.67 | 0.460055 |
Target: 5'- uCGCGGCGugggacGCg--CUC-AACGCCGCCAc -3' miRNA: 3'- -GCGCCGC------CGaagGAGcUUGCGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 37051 | 0.68 | 0.386674 |
Target: 5'- cCGUGGuUGGCgcgCCUgGAGCGUCagGCCAu -3' miRNA: 3'- -GCGCC-GCCGaa-GGAgCUUGCGG--UGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 44806 | 0.68 | 0.361215 |
Target: 5'- uGCGGCGGUgauguacacggUUUCUgGGACGUgGCCc -3' miRNA: 3'- gCGCCGCCG-----------AAGGAgCUUGCGgUGGu -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 12176 | 0.72 | 0.216511 |
Target: 5'- aGCGGCGGCgUUCgcaaUCGGguugggugcuaACGCCGCUAa -3' miRNA: 3'- gCGCCGCCG-AAGg---AGCU-----------UGCGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 40107 | 0.72 | 0.216511 |
Target: 5'- -uCGGCGGCcugUCCgagcgUGAACGCCgACCAc -3' miRNA: 3'- gcGCCGCCGa--AGGa----GCUUGCGG-UGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 52476 | 0.72 | 0.222107 |
Target: 5'- aGCGGUGGCaccacaagugUCUUCaGAGCGCC-CCAa -3' miRNA: 3'- gCGCCGCCGa---------AGGAG-CUUGCGGuGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 8461 | 0.71 | 0.233668 |
Target: 5'- cCGCGGUGGgaCUUCCUCGAugAgGCCAguguCCGu -3' miRNA: 3'- -GCGCCGCC--GAAGGAGCU--UgCGGU----GGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 24454 | 0.7 | 0.292042 |
Target: 5'- uGCGGCGGCggCCgccaccaugUCGAGa-CCACCGa -3' miRNA: 3'- gCGCCGCCGaaGG---------AGCUUgcGGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 22124 | 0.69 | 0.336946 |
Target: 5'- aGUGGCGcGCgcggCCUCG-GCGgCACCGc -3' miRNA: 3'- gCGCCGC-CGaa--GGAGCuUGCgGUGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 3803 | 0.66 | 0.509481 |
Target: 5'- cCGCcauGGCGGCUUCgCUCc-ACGUCuCCAa -3' miRNA: 3'- -GCG---CCGCCGAAG-GAGcuUGCGGuGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 1363 | 0.72 | 0.200443 |
Target: 5'- gCGCGGCGGCguaCCcauaaaGAACGCCAacCCGa -3' miRNA: 3'- -GCGCCGCCGaa-GGag----CUUGCGGU--GGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 50685 | 0.72 | 0.200443 |
Target: 5'- cCGCGGCGGCUUCCUCuu-UGgC-CCGg -3' miRNA: 3'- -GCGCCGCCGAAGGAGcuuGCgGuGGU- -5' |
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19564 | 3' | -59.7 | NC_004686.1 | + | 10659 | 0.72 | 0.222107 |
Target: 5'- gCGCGGCGGCUuucgUCUUCGcAGC-CCACg- -3' miRNA: 3'- -GCGCCGCCGA----AGGAGC-UUGcGGUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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