miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19564 3' -59.7 NC_004686.1 + 48988 0.69 0.313887
Target:  5'- gGCGGCGGCcagaUUCCgu--GCGCCGuCCGc -3'
miRNA:   3'- gCGCCGCCG----AAGGagcuUGCGGU-GGU- -5'
19564 3' -59.7 NC_004686.1 + 24454 0.7 0.292042
Target:  5'- uGCGGCGGCggCCgccaccaugUCGAGa-CCACCGa -3'
miRNA:   3'- gCGCCGCCGaaGG---------AGCUUgcGGUGGU- -5'
19564 3' -59.7 NC_004686.1 + 38720 0.71 0.251955
Target:  5'- cCGCaGCGGCga-CgaaGAACGCCACCu -3'
miRNA:   3'- -GCGcCGCCGaagGag-CUUGCGGUGGu -5'
19564 3' -59.7 NC_004686.1 + 8461 0.71 0.233668
Target:  5'- cCGCGGUGGgaCUUCCUCGAugAgGCCAguguCCGu -3'
miRNA:   3'- -GCGCCGCC--GAAGGAGCU--UgCGGU----GGU- -5'
19564 3' -59.7 NC_004686.1 + 10659 0.72 0.222107
Target:  5'- gCGCGGCGGCUuucgUCUUCGcAGC-CCACg- -3'
miRNA:   3'- -GCGCCGCCGA----AGGAGC-UUGcGGUGgu -5'
19564 3' -59.7 NC_004686.1 + 52476 0.72 0.222107
Target:  5'- aGCGGUGGCaccacaagugUCUUCaGAGCGCC-CCAa -3'
miRNA:   3'- gCGCCGCCGa---------AGGAG-CUUGCGGuGGU- -5'
19564 3' -59.7 NC_004686.1 + 12176 0.72 0.216511
Target:  5'- aGCGGCGGCgUUCgcaaUCGGguugggugcuaACGCCGCUAa -3'
miRNA:   3'- gCGCCGCCG-AAGg---AGCU-----------UGCGGUGGU- -5'
19564 3' -59.7 NC_004686.1 + 40107 0.72 0.216511
Target:  5'- -uCGGCGGCcugUCCgagcgUGAACGCCgACCAc -3'
miRNA:   3'- gcGCCGCCGa--AGGa----GCUUGCGG-UGGU- -5'
19564 3' -59.7 NC_004686.1 + 50685 0.72 0.200443
Target:  5'- cCGCGGCGGCUUCCUCuu-UGgC-CCGg -3'
miRNA:   3'- -GCGCCGCCGAAGGAGcuuGCgGuGGU- -5'
19564 3' -59.7 NC_004686.1 + 1363 0.72 0.200443
Target:  5'- gCGCGGCGGCguaCCcauaaaGAACGCCAacCCGa -3'
miRNA:   3'- -GCGCCGCCGaa-GGag----CUUGCGGU--GGU- -5'
19564 3' -59.7 NC_004686.1 + 51085 0.77 0.089577
Target:  5'- aGCGGCGGCaUUCUCGucCGCCGCgAg -3'
miRNA:   3'- gCGCCGCCGaAGGAGCuuGCGGUGgU- -5'
19564 3' -59.7 NC_004686.1 + 7093 1.08 0.000511
Target:  5'- uCGCGGCGGCUUCCUCGAACGCCACCAc -3'
miRNA:   3'- -GCGCCGCCGAAGGAGCUUGCGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.