miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19570 5' -53 NC_004686.1 + 14715 0.67 0.806419
Target:  5'- aUGAAGucGUCGGCgAACUCGgCGA-CGGUg -3'
miRNA:   3'- cACUUC--UAGCCG-UUGGGU-GCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 15126 0.67 0.776783
Target:  5'- cUGAAGGUuaucgaCGGUGcCCCGuaccUGAUCGGCg -3'
miRNA:   3'- cACUUCUA------GCCGUuGGGU----GCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 19089 0.7 0.614279
Target:  5'- gGUGAGGG-CGGCuGGCCCGguaagcCGAaCGGCa -3'
miRNA:   3'- -CACUUCUaGCCG-UUGGGU------GCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 20043 0.69 0.70283
Target:  5'- cGUGuuGAU-GGCAAUCCAgGA-CGGCc -3'
miRNA:   3'- -CACuuCUAgCCGUUGGGUgCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 23937 0.72 0.493862
Target:  5'- aGUGAAGAUCGGCGAagguguCCCGuccgaauCGAUCGuCa -3'
miRNA:   3'- -CACUUCUAGCCGUU------GGGU-------GCUAGCcG- -5'
19570 5' -53 NC_004686.1 + 26291 0.67 0.776783
Target:  5'- uGUGAAuGUUGGCGaguggGCCUGCGAggucggggCGGCc -3'
miRNA:   3'- -CACUUcUAGCCGU-----UGGGUGCUa-------GCCG- -5'
19570 5' -53 NC_004686.1 + 26706 0.66 0.86038
Target:  5'- -cGGAGGcagCGuCGGCCCGggcugcgguuCGAUCGGCg -3'
miRNA:   3'- caCUUCUa--GCcGUUGGGU----------GCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 27436 0.67 0.776783
Target:  5'- -cGggGucucauguUCGGCAACCCGCGc-CGcGCc -3'
miRNA:   3'- caCuuCu-------AGCCGUUGGGUGCuaGC-CG- -5'
19570 5' -53 NC_004686.1 + 27721 0.71 0.548206
Target:  5'- ------uUCGGCAACCCA--GUCGGCg -3'
miRNA:   3'- cacuucuAGCCGUUGGGUgcUAGCCG- -5'
19570 5' -53 NC_004686.1 + 27749 0.69 0.68089
Target:  5'- ----cGGUCGGaccacCGACCCACGAguuuUCGGUg -3'
miRNA:   3'- cacuuCUAGCC-----GUUGGGUGCU----AGCCG- -5'
19570 5' -53 NC_004686.1 + 28755 0.66 0.843274
Target:  5'- uUGggGGgcgCGGUGAUgCGCGGguuuuaugCGGCg -3'
miRNA:   3'- cACuuCUa--GCCGUUGgGUGCUa-------GCCG- -5'
19570 5' -53 NC_004686.1 + 32437 0.79 0.205374
Target:  5'- cUGAAGAUCGGCAaguuucuugcGCCCgAUGA-CGGCg -3'
miRNA:   3'- cACUUCUAGCCGU----------UGGG-UGCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 34997 0.67 0.805457
Target:  5'- ------cUUGGCAACCCAguagggcUGAUCGGUg -3'
miRNA:   3'- cacuucuAGCCGUUGGGU-------GCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 35272 0.67 0.796712
Target:  5'- uUGGAGuuGUCGGUu-CCgGCG-UCGGCg -3'
miRNA:   3'- cACUUC--UAGCCGuuGGgUGCuAGCCG- -5'
19570 5' -53 NC_004686.1 + 35524 0.66 0.86038
Target:  5'- gGUGAguGGGUgaaUGGUgAGCCCACGGUgCGGa -3'
miRNA:   3'- -CACU--UCUA---GCCG-UUGGGUGCUA-GCCg -5'
19570 5' -53 NC_004686.1 + 36814 0.67 0.776783
Target:  5'- -gGGAGAcgUGGaucGCCCAuCGGUUGGCa -3'
miRNA:   3'- caCUUCUa-GCCgu-UGGGU-GCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 36890 0.67 0.776783
Target:  5'- ----cGAUgGGCGAUCCACGucucccaCGGCg -3'
miRNA:   3'- cacuuCUAgCCGUUGGGUGCua-----GCCG- -5'
19570 5' -53 NC_004686.1 + 37531 0.69 0.68089
Target:  5'- -gGAAGAcgacUCGGCuGCUUugGAgugCGGCc -3'
miRNA:   3'- caCUUCU----AGCCGuUGGGugCUa--GCCG- -5'
19570 5' -53 NC_004686.1 + 39368 0.69 0.658759
Target:  5'- gGUGcGGuggUGGCAGCCCAgcUGuUCGGCg -3'
miRNA:   3'- -CACuUCua-GCCGUUGGGU--GCuAGCCG- -5'
19570 5' -53 NC_004686.1 + 39440 0.69 0.70283
Target:  5'- uUGGGuGUUgGGCAGgCCACGAucUCGGCg -3'
miRNA:   3'- cACUUcUAG-CCGUUgGGUGCU--AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.