Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19570 | 5' | -53 | NC_004686.1 | + | 3978 | 0.7 | 0.603174 |
Target: 5'- -gGAGGAUCcGCAGgCCGCGGauacaugCGGCg -3' miRNA: 3'- caCUUCUAGcCGUUgGGUGCUa------GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 4187 | 0.7 | 0.6254 |
Target: 5'- -gGAAGAUCGu--GCCCGCGugCGGCa -3' miRNA: 3'- caCUUCUAGCcguUGGGUGCuaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 5677 | 0.69 | 0.691889 |
Target: 5'- cUGAucgAGuUCGGCGACCCggACGGUCugGGUg -3' miRNA: 3'- cACU---UCuAGCCGUUGGG--UGCUAG--CCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 5922 | 0.68 | 0.735183 |
Target: 5'- gGUGGcuAUCGGCuGCCgGCGAaacgugcagCGGCg -3' miRNA: 3'- -CACUucUAGCCGuUGGgUGCUa--------GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 6971 | 0.73 | 0.424591 |
Target: 5'- --cAAGAUCGGCGgcuacacaaGCUC-CGAUCGGCu -3' miRNA: 3'- cacUUCUAGCCGU---------UGGGuGCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 8798 | 0.66 | 0.86038 |
Target: 5'- -cGGAGAUCGcGCAGgCCAaggccgaguggGAUCGGg -3' miRNA: 3'- caCUUCUAGC-CGUUgGGUg----------CUAGCCg -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9253 | 0.69 | 0.691889 |
Target: 5'- cGUcGAGuUCGGCGACCgaucuCACGGcCGGCg -3' miRNA: 3'- -CAcUUCuAGCCGUUGG-----GUGCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9352 | 0.67 | 0.773739 |
Target: 5'- aUGAGGcggaGUCGGCGuCCCGCcguuccgggcagaaGAUCGGg -3' miRNA: 3'- cACUUC----UAGCCGUuGGGUG--------------CUAGCCg -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9514 | 0.73 | 0.45402 |
Target: 5'- -aGAAGAUCGGCAACgCUgucggaACGGucaUCGGUa -3' miRNA: 3'- caCUUCUAGCCGUUG-GG------UGCU---AGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9688 | 0.66 | 0.843274 |
Target: 5'- -gGGAGGUagCGaGCAGCCCGacagCGGCa -3' miRNA: 3'- caCUUCUA--GC-CGUUGGGUgcuaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9876 | 0.69 | 0.658759 |
Target: 5'- aGUGggGAcgccggCGGCGACCgCAgUGG-CGGCa -3' miRNA: 3'- -CACuuCUa-----GCCGUUGG-GU-GCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 10041 | 1.13 | 0.000963 |
Target: 5'- cGUGAAGAUCGGCAACCCACGAUCGGCg -3' miRNA: 3'- -CACUUCUAGCCGUUGGGUGCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 10675 | 0.73 | 0.464073 |
Target: 5'- --aAAGcAUCGGCGACCUGCGcggCGGCu -3' miRNA: 3'- cacUUC-UAGCCGUUGGGUGCua-GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 10988 | 0.67 | 0.78683 |
Target: 5'- cUGAGGAUUGGaAGCguCCACGuuUCGGUg -3' miRNA: 3'- cACUUCUAGCCgUUG--GGUGCu-AGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 11039 | 0.66 | 0.825262 |
Target: 5'- ----cGAUCGGUGGCCCcggccCGAagGGCa -3' miRNA: 3'- cacuuCUAGCCGUUGGGu----GCUagCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 12028 | 0.72 | 0.505389 |
Target: 5'- uGUGggGAgcgCGGCAccaucacuGCCCugGA-CGGg -3' miRNA: 3'- -CACuuCUa--GCCGU--------UGGGugCUaGCCg -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 12873 | 0.7 | 0.636527 |
Target: 5'- -------aCGGCGAggaCCGCGGUCGGCa -3' miRNA: 3'- cacuucuaGCCGUUg--GGUGCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 13580 | 0.7 | 0.636527 |
Target: 5'- -gGucGAUCGuCAACCCGCcAUCGGUg -3' miRNA: 3'- caCuuCUAGCcGUUGGGUGcUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 13772 | 0.72 | 0.494905 |
Target: 5'- uGUGAGgcGAUCuGGCGugCCACGcUCGcGCa -3' miRNA: 3'- -CACUU--CUAG-CCGUugGGUGCuAGC-CG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 14595 | 0.67 | 0.806419 |
Target: 5'- -cGGAGGUUGGCG--CCGCGccaCGGCu -3' miRNA: 3'- caCUUCUAGCCGUugGGUGCua-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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