Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19570 | 5' | -53 | NC_004686.1 | + | 10988 | 0.67 | 0.78683 |
Target: 5'- cUGAGGAUUGGaAGCguCCACGuuUCGGUg -3' miRNA: 3'- cACUUCUAGCCgUUG--GGUGCu-AGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 5677 | 0.69 | 0.691889 |
Target: 5'- cUGAucgAGuUCGGCGACCCggACGGUCugGGUg -3' miRNA: 3'- cACU---UCuAGCCGUUGGG--UGCUAG--CCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 20043 | 0.69 | 0.70283 |
Target: 5'- cGUGuuGAU-GGCAAUCCAgGA-CGGCc -3' miRNA: 3'- -CACuuCUAgCCGUUGGGUgCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 39440 | 0.69 | 0.70283 |
Target: 5'- uUGGGuGUUgGGCAGgCCACGAucUCGGCg -3' miRNA: 3'- cACUUcUAG-CCGUUgGGUGCU--AGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 5922 | 0.68 | 0.735183 |
Target: 5'- gGUGGcuAUCGGCuGCCgGCGAaacgugcagCGGCg -3' miRNA: 3'- -CACUucUAGCCGuUGGgUGCUa--------GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9352 | 0.67 | 0.773739 |
Target: 5'- aUGAGGcggaGUCGGCGuCCCGCcguuccgggcagaaGAUCGGg -3' miRNA: 3'- cACUUC----UAGCCGUuGGGUG--------------CUAGCCg -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 15126 | 0.67 | 0.776783 |
Target: 5'- cUGAAGGUuaucgaCGGUGcCCCGuaccUGAUCGGCg -3' miRNA: 3'- cACUUCUA------GCCGUuGGGU----GCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 36814 | 0.67 | 0.776783 |
Target: 5'- -gGGAGAcgUGGaucGCCCAuCGGUUGGCa -3' miRNA: 3'- caCUUCUa-GCCgu-UGGGU-GCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 27436 | 0.67 | 0.776783 |
Target: 5'- -cGggGucucauguUCGGCAACCCGCGc-CGcGCc -3' miRNA: 3'- caCuuCu-------AGCCGUUGGGUGCuaGC-CG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 12873 | 0.7 | 0.636527 |
Target: 5'- -------aCGGCGAggaCCGCGGUCGGCa -3' miRNA: 3'- cacuucuaGCCGUUg--GGUGCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 4187 | 0.7 | 0.6254 |
Target: 5'- -gGAAGAUCGu--GCCCGCGugCGGCa -3' miRNA: 3'- caCUUCUAGCcguUGGGUGCuaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 19089 | 0.7 | 0.614279 |
Target: 5'- gGUGAGGG-CGGCuGGCCCGguaagcCGAaCGGCa -3' miRNA: 3'- -CACUUCUaGCCG-UUGGGU------GCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 6971 | 0.73 | 0.424591 |
Target: 5'- --cAAGAUCGGCGgcuacacaaGCUC-CGAUCGGCu -3' miRNA: 3'- cacUUCUAGCCGU---------UGGGuGCUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 9514 | 0.73 | 0.45402 |
Target: 5'- -aGAAGAUCGGCAACgCUgucggaACGGucaUCGGUa -3' miRNA: 3'- caCUUCUAGCCGUUG-GG------UGCU---AGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 13772 | 0.72 | 0.494905 |
Target: 5'- uGUGAGgcGAUCuGGCGugCCACGcUCGcGCa -3' miRNA: 3'- -CACUU--CUAG-CCGUugGGUGCuAGC-CG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 56059 | 0.72 | 0.505389 |
Target: 5'- cUGgcGGuUCGGC-ACCCGCGAcCGGUg -3' miRNA: 3'- cACuuCU-AGCCGuUGGGUGCUaGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 27721 | 0.71 | 0.548206 |
Target: 5'- ------uUCGGCAACCCA--GUCGGCg -3' miRNA: 3'- cacuucuAGCCGUUGGGUgcUAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 3978 | 0.7 | 0.603174 |
Target: 5'- -gGAGGAUCcGCAGgCCGCGGauacaugCGGCg -3' miRNA: 3'- caCUUCUAGcCGUUgGGUGCUa------GCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 47562 | 0.7 | 0.603174 |
Target: 5'- uUGGAGcgcCGGCuGGCCCGCGcuGUCGGUc -3' miRNA: 3'- cACUUCua-GCCG-UUGGGUGC--UAGCCG- -5' |
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19570 | 5' | -53 | NC_004686.1 | + | 49887 | 0.7 | 0.610945 |
Target: 5'- -cGAAGGccgCGGCGAacgaucaucgagauCaCCGCGAUCGGUg -3' miRNA: 3'- caCUUCUa--GCCGUU--------------G-GGUGCUAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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