miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19570 5' -53 NC_004686.1 + 10041 1.13 0.000963
Target:  5'- cGUGAAGAUCGGCAACCCACGAUCGGCg -3'
miRNA:   3'- -CACUUCUAGCCGUUGGGUGCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 32437 0.79 0.205374
Target:  5'- cUGAAGAUCGGCAaguuucuugcGCCCgAUGA-CGGCg -3'
miRNA:   3'- cACUUCUAGCCGU----------UGGG-UGCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 6971 0.73 0.424591
Target:  5'- --cAAGAUCGGCGgcuacacaaGCUC-CGAUCGGCu -3'
miRNA:   3'- cacUUCUAGCCGU---------UGGGuGCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 9514 0.73 0.45402
Target:  5'- -aGAAGAUCGGCAACgCUgucggaACGGucaUCGGUa -3'
miRNA:   3'- caCUUCUAGCCGUUG-GG------UGCU---AGCCG- -5'
19570 5' -53 NC_004686.1 + 10675 0.73 0.464073
Target:  5'- --aAAGcAUCGGCGACCUGCGcggCGGCu -3'
miRNA:   3'- cacUUC-UAGCCGUUGGGUGCua-GCCG- -5'
19570 5' -53 NC_004686.1 + 23937 0.72 0.493862
Target:  5'- aGUGAAGAUCGGCGAagguguCCCGuccgaauCGAUCGuCa -3'
miRNA:   3'- -CACUUCUAGCCGUU------GGGU-------GCUAGCcG- -5'
19570 5' -53 NC_004686.1 + 13772 0.72 0.494905
Target:  5'- uGUGAGgcGAUCuGGCGugCCACGcUCGcGCa -3'
miRNA:   3'- -CACUU--CUAG-CCGUugGGUGCuAGC-CG- -5'
19570 5' -53 NC_004686.1 + 56059 0.72 0.505389
Target:  5'- cUGgcGGuUCGGC-ACCCGCGAcCGGUg -3'
miRNA:   3'- cACuuCU-AGCCGuUGGGUGCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 12028 0.72 0.505389
Target:  5'- uGUGggGAgcgCGGCAccaucacuGCCCugGA-CGGg -3'
miRNA:   3'- -CACuuCUa--GCCGU--------UGGGugCUaGCCg -5'
19570 5' -53 NC_004686.1 + 27721 0.71 0.548206
Target:  5'- ------uUCGGCAACCCA--GUCGGCg -3'
miRNA:   3'- cacuucuAGCCGUUGGGUgcUAGCCG- -5'
19570 5' -53 NC_004686.1 + 3978 0.7 0.603174
Target:  5'- -gGAGGAUCcGCAGgCCGCGGauacaugCGGCg -3'
miRNA:   3'- caCUUCUAGcCGUUgGGUGCUa------GCCG- -5'
19570 5' -53 NC_004686.1 + 47562 0.7 0.603174
Target:  5'- uUGGAGcgcCGGCuGGCCCGCGcuGUCGGUc -3'
miRNA:   3'- cACUUCua-GCCG-UUGGGUGC--UAGCCG- -5'
19570 5' -53 NC_004686.1 + 49887 0.7 0.610945
Target:  5'- -cGAAGGccgCGGCGAacgaucaucgagauCaCCGCGAUCGGUg -3'
miRNA:   3'- caCUUCUa--GCCGUU--------------G-GGUGCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 19089 0.7 0.614279
Target:  5'- gGUGAGGG-CGGCuGGCCCGguaagcCGAaCGGCa -3'
miRNA:   3'- -CACUUCUaGCCG-UUGGGU------GCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 4187 0.7 0.6254
Target:  5'- -gGAAGAUCGu--GCCCGCGugCGGCa -3'
miRNA:   3'- caCUUCUAGCcguUGGGUGCuaGCCG- -5'
19570 5' -53 NC_004686.1 + 13580 0.7 0.636527
Target:  5'- -gGucGAUCGuCAACCCGCcAUCGGUg -3'
miRNA:   3'- caCuuCUAGCcGUUGGGUGcUAGCCG- -5'
19570 5' -53 NC_004686.1 + 12873 0.7 0.636527
Target:  5'- -------aCGGCGAggaCCGCGGUCGGCa -3'
miRNA:   3'- cacuucuaGCCGUUg--GGUGCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 9876 0.69 0.658759
Target:  5'- aGUGggGAcgccggCGGCGACCgCAgUGG-CGGCa -3'
miRNA:   3'- -CACuuCUa-----GCCGUUGG-GU-GCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 39368 0.69 0.658759
Target:  5'- gGUGcGGuggUGGCAGCCCAgcUGuUCGGCg -3'
miRNA:   3'- -CACuUCua-GCCGUUGGGU--GCuAGCCG- -5'
19570 5' -53 NC_004686.1 + 42015 0.69 0.669842
Target:  5'- -cGAAGAUgauaggaccgCuGCGGCCCACGAUuuccCGGCc -3'
miRNA:   3'- caCUUCUA----------GcCGUUGGGUGCUA----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.