miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19576 3' -55 NC_004686.1 + 12966 1.15 0.000475
Target:  5'- cGGACAGAUAGACACCCUGCCGACCGCg -3'
miRNA:   3'- -CCUGUCUAUCUGUGGGACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 18764 0.71 0.478515
Target:  5'- gGGGCAGcgccucgucaagcugGUAGuACACCCaGCCGGuuGUg -3'
miRNA:   3'- -CCUGUC---------------UAUC-UGUGGGaCGGCUggCG- -5'
19576 3' -55 NC_004686.1 + 55601 0.7 0.494764
Target:  5'- cGugAGAU-GugGCCgacgaUGCCGAUCGCg -3'
miRNA:   3'- cCugUCUAuCugUGGg----ACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 4179 0.7 0.497838
Target:  5'- gGGACAGccucgcaGUAGcaaugcccaugacacGCgaACCUUGCCGACCGUu -3'
miRNA:   3'- -CCUGUC-------UAUC---------------UG--UGGGACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 33855 0.7 0.515419
Target:  5'- uGGGCcgGGGU-GACGCgaagGCCGGCCGCg -3'
miRNA:   3'- -CCUG--UCUAuCUGUGgga-CGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 49196 0.69 0.568432
Target:  5'- cGGAUGGAauGACACaCCc-CCGACCGUg -3'
miRNA:   3'- -CCUGUCUauCUGUG-GGacGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 9892 0.69 0.596559
Target:  5'- cGGugAGAgacuguccaguggGGACGCCg-GCggCGACCGCa -3'
miRNA:   3'- -CCugUCUa------------UCUGUGGgaCG--GCUGGCG- -5'
19576 3' -55 NC_004686.1 + 41958 0.69 0.600907
Target:  5'- cGGACAGGgucGGccGCACCUUGUgGAUCGa -3'
miRNA:   3'- -CCUGUCUa--UC--UGUGGGACGgCUGGCg -5'
19576 3' -55 NC_004686.1 + 54541 0.68 0.610706
Target:  5'- uGGuCGGGUuguucgaAGACACCCUGCCaa-CGUu -3'
miRNA:   3'- -CCuGUCUA-------UCUGUGGGACGGcugGCG- -5'
19576 3' -55 NC_004686.1 + 56089 0.68 0.611796
Target:  5'- cGGGCGGGUGGGCgACggUGCCGuugUCGCu -3'
miRNA:   3'- -CCUGUCUAUCUG-UGggACGGCu--GGCG- -5'
19576 3' -55 NC_004686.1 + 24434 0.68 0.622702
Target:  5'- uGACGGGgcuccacacGGCGCCUUGUCcGCCGCu -3'
miRNA:   3'- cCUGUCUau-------CUGUGGGACGGcUGGCG- -5'
19576 3' -55 NC_004686.1 + 16969 0.68 0.629251
Target:  5'- uGGGCGGucauaccaGCCCucaauaguguUGCCGGCCGCc -3'
miRNA:   3'- -CCUGUCuaucug--UGGG----------ACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 2386 0.68 0.632525
Target:  5'- uGGACGGGUaAGGCuguugaugcuuugGCCC-GCCG-CUGCa -3'
miRNA:   3'- -CCUGUCUA-UCUG-------------UGGGaCGGCuGGCG- -5'
19576 3' -55 NC_004686.1 + 23854 0.68 0.64453
Target:  5'- cGGACG---GGACACCUUcGCCGAUCu- -3'
miRNA:   3'- -CCUGUcuaUCUGUGGGA-CGGCUGGcg -5'
19576 3' -55 NC_004686.1 + 11435 0.68 0.655431
Target:  5'- gGGACAuuUGGaaGCACCCauaUGACCGCa -3'
miRNA:   3'- -CCUGUcuAUC--UGUGGGacgGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 21299 0.68 0.666312
Target:  5'- uGGCcc--AGGCACCgCUGCUGACCGa -3'
miRNA:   3'- cCUGucuaUCUGUGG-GACGGCUGGCg -5'
19576 3' -55 NC_004686.1 + 47067 0.68 0.666312
Target:  5'- gGGACAGccGGACGCCCUuauCCGGgaaGCg -3'
miRNA:   3'- -CCUGUCuaUCUGUGGGAc--GGCUgg-CG- -5'
19576 3' -55 NC_004686.1 + 39184 0.67 0.677161
Target:  5'- gGGcGCAGAggugGGGCGCa-UGaCCGGCCGUg -3'
miRNA:   3'- -CC-UGUCUa---UCUGUGggAC-GGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 51358 0.67 0.677161
Target:  5'- -uGCAGGUGGGCAgCCaguucuacGCCGAgUGCg -3'
miRNA:   3'- ccUGUCUAUCUGUgGGa-------CGGCUgGCG- -5'
19576 3' -55 NC_004686.1 + 43461 0.67 0.677161
Target:  5'- --------cGAUugCCUGCCGAUCGCc -3'
miRNA:   3'- ccugucuauCUGugGGACGGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.