miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19576 3' -55 NC_004686.1 + 33855 0.7 0.515419
Target:  5'- uGGGCcgGGGU-GACGCgaagGCCGGCCGCg -3'
miRNA:   3'- -CCUG--UCUAuCUGUGgga-CGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 31024 0.65 0.781538
Target:  5'- cGGACAGAac--CACCagcaGCCuuGGCCGCg -3'
miRNA:   3'- -CCUGUCUaucuGUGGga--CGG--CUGGCG- -5'
19576 3' -55 NC_004686.1 + 12844 0.66 0.769599
Target:  5'- cGGGCAGAacgaUGaACACCuCUGCgugcacggcgagGACCGCg -3'
miRNA:   3'- -CCUGUCU----AUcUGUGG-GACGg-----------CUGGCG- -5'
19576 3' -55 NC_004686.1 + 13277 0.67 0.72003
Target:  5'- cGGACuGGUaugAGAagcCGCaCgUGUCGACCGCc -3'
miRNA:   3'- -CCUGuCUA---UCU---GUG-GgACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 13061 0.67 0.72003
Target:  5'- cGGAgCAGAacGAguCCCUGCUGAUCcagGCg -3'
miRNA:   3'- -CCU-GUCUauCUguGGGACGGCUGG---CG- -5'
19576 3' -55 NC_004686.1 + 40586 0.67 0.708348
Target:  5'- gGGACAGGUuccgugcccguugGGACACCggUUGCgacGCCGCc -3'
miRNA:   3'- -CCUGUCUA-------------UCUGUGG--GACGgc-UGGCG- -5'
19576 3' -55 NC_004686.1 + 12139 0.67 0.698723
Target:  5'- cGGGCAGuuucGGCGCCggcgGUCaGGCCGCg -3'
miRNA:   3'- -CCUGUCuau-CUGUGGga--CGG-CUGGCG- -5'
19576 3' -55 NC_004686.1 + 11730 0.67 0.698723
Target:  5'- cGGucACAuGGcGGGCACCCUGCCcaACgGCa -3'
miRNA:   3'- -CC--UGU-CUaUCUGUGGGACGGc-UGgCG- -5'
19576 3' -55 NC_004686.1 + 45032 0.67 0.69765
Target:  5'- aGGACAGGUcGAaaucaACCCcuacUGCCGACagauccuCGCc -3'
miRNA:   3'- -CCUGUCUAuCUg----UGGG----ACGGCUG-------GCG- -5'
19576 3' -55 NC_004686.1 + 39184 0.67 0.677161
Target:  5'- gGGcGCAGAggugGGGCGCa-UGaCCGGCCGUg -3'
miRNA:   3'- -CC-UGUCUa---UCUGUGggAC-GGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 41958 0.69 0.600907
Target:  5'- cGGACAGGgucGGccGCACCUUGUgGAUCGa -3'
miRNA:   3'- -CCUGUCUa--UC--UGUGGGACGgCUGGCg -5'
19576 3' -55 NC_004686.1 + 54541 0.68 0.610706
Target:  5'- uGGuCGGGUuguucgaAGACACCCUGCCaa-CGUu -3'
miRNA:   3'- -CCuGUCUA-------UCUGUGGGACGGcugGCG- -5'
19576 3' -55 NC_004686.1 + 2386 0.68 0.632525
Target:  5'- uGGACGGGUaAGGCuguugaugcuuugGCCC-GCCG-CUGCa -3'
miRNA:   3'- -CCUGUCUA-UCUG-------------UGGGaCGGCuGGCG- -5'
19576 3' -55 NC_004686.1 + 23854 0.68 0.64453
Target:  5'- cGGACG---GGACACCUUcGCCGAUCu- -3'
miRNA:   3'- -CCUGUcuaUCUGUGGGA-CGGCUGGcg -5'
19576 3' -55 NC_004686.1 + 11435 0.68 0.655431
Target:  5'- gGGACAuuUGGaaGCACCCauaUGACCGCa -3'
miRNA:   3'- -CCUGUcuAUC--UGUGGGacgGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 47067 0.68 0.666312
Target:  5'- gGGACAGccGGACGCCCUuauCCGGgaaGCg -3'
miRNA:   3'- -CCUGUCuaUCUGUGGGAc--GGCUgg-CG- -5'
19576 3' -55 NC_004686.1 + 51358 0.67 0.677161
Target:  5'- -uGCAGGUGGGCAgCCaguucuacGCCGAgUGCg -3'
miRNA:   3'- ccUGUCUAUCUGUgGGa-------CGGCUgGCG- -5'
19576 3' -55 NC_004686.1 + 5265 0.66 0.775595
Target:  5'- cGGACAGGUccgccauggucugcaGGACGCCgaGuuGACg-- -3'
miRNA:   3'- -CCUGUCUA---------------UCUGUGGgaCggCUGgcg -5'
19576 3' -55 NC_004686.1 + 18764 0.71 0.478515
Target:  5'- gGGGCAGcgccucgucaagcugGUAGuACACCCaGCCGGuuGUg -3'
miRNA:   3'- -CCUGUC---------------UAUC-UGUGGGaCGGCUggCG- -5'
19576 3' -55 NC_004686.1 + 55601 0.7 0.494764
Target:  5'- cGugAGAU-GugGCCgacgaUGCCGAUCGCg -3'
miRNA:   3'- cCugUCUAuCugUGGg----ACGGCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.