Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19576 | 3' | -55 | NC_004686.1 | + | 17443 | 0.67 | 0.72003 |
Target: 5'- aGGAUGGGaaugucuGACGCCCaGuuGGCCaGCg -3' miRNA: 3'- -CCUGUCUau-----CUGUGGGaCggCUGG-CG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 22356 | 0.67 | 0.72003 |
Target: 5'- uGAUGGuguuguguUGGACAgCUUGCCGccGCCGCc -3' miRNA: 3'- cCUGUCu-------AUCUGUgGGACGGC--UGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 7182 | 0.66 | 0.760512 |
Target: 5'- uGGCcgccguGCACCCUGCCGgcucgacACCGCa -3' miRNA: 3'- cCUGucuaucUGUGGGACGGC-------UGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 4713 | 0.66 | 0.775595 |
Target: 5'- aGGaACAGAUcagcgucuuccagugAGAUuCCgUGCgUGACCGCa -3' miRNA: 3'- -CC-UGUCUA---------------UCUGuGGgACG-GCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 21299 | 0.68 | 0.666312 |
Target: 5'- uGGCcc--AGGCACCgCUGCUGACCGa -3' miRNA: 3'- cCUGucuaUCUGUGG-GACGGCUGGCg -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 16969 | 0.68 | 0.629251 |
Target: 5'- uGGGCGGucauaccaGCCCucaauaguguUGCCGGCCGCc -3' miRNA: 3'- -CCUGUCuaucug--UGGG----------ACGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 24434 | 0.68 | 0.622702 |
Target: 5'- uGACGGGgcuccacacGGCGCCUUGUCcGCCGCu -3' miRNA: 3'- cCUGUCUau-------CUGUGGGACGGcUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 56089 | 0.68 | 0.611796 |
Target: 5'- cGGGCGGGUGGGCgACggUGCCGuugUCGCu -3' miRNA: 3'- -CCUGUCUAUCUG-UGggACGGCu--GGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 9892 | 0.69 | 0.596559 |
Target: 5'- cGGugAGAgacuguccaguggGGACGCCg-GCggCGACCGCa -3' miRNA: 3'- -CCugUCUa------------UCUGUGGgaCG--GCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 49196 | 0.69 | 0.568432 |
Target: 5'- cGGAUGGAauGACACaCCc-CCGACCGUg -3' miRNA: 3'- -CCUGUCUauCUGUG-GGacGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 4179 | 0.7 | 0.497838 |
Target: 5'- gGGACAGccucgcaGUAGcaaugcccaugacacGCgaACCUUGCCGACCGUu -3' miRNA: 3'- -CCUGUC-------UAUC---------------UG--UGGGACGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 55601 | 0.7 | 0.494764 |
Target: 5'- cGugAGAU-GugGCCgacgaUGCCGAUCGCg -3' miRNA: 3'- cCugUCUAuCugUGGg----ACGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 18764 | 0.71 | 0.478515 |
Target: 5'- gGGGCAGcgccucgucaagcugGUAGuACACCCaGCCGGuuGUg -3' miRNA: 3'- -CCUGUC---------------UAUC-UGUGGGaCGGCUggCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 12966 | 1.15 | 0.000475 |
Target: 5'- cGGACAGAUAGACACCCUGCCGACCGCg -3' miRNA: 3'- -CCUGUCUAUCUGUGGGACGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 5265 | 0.66 | 0.775595 |
Target: 5'- cGGACAGGUccgccauggucugcaGGACGCCgaGuuGACg-- -3' miRNA: 3'- -CCUGUCUA---------------UCUGUGGgaCggCUGgcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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