miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19576 3' -55 NC_004686.1 + 24434 0.68 0.622702
Target:  5'- uGACGGGgcuccacacGGCGCCUUGUCcGCCGCu -3'
miRNA:   3'- cCUGUCUau-------CUGUGGGACGGcUGGCG- -5'
19576 3' -55 NC_004686.1 + 31024 0.65 0.781538
Target:  5'- cGGACAGAac--CACCagcaGCCuuGGCCGCg -3'
miRNA:   3'- -CCUGUCUaucuGUGGga--CGG--CUGGCG- -5'
19576 3' -55 NC_004686.1 + 33855 0.7 0.515419
Target:  5'- uGGGCcgGGGU-GACGCgaagGCCGGCCGCg -3'
miRNA:   3'- -CCUG--UCUAuCUGUGgga-CGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 36837 0.67 0.687969
Target:  5'- gGGGCGGGUcGuCACCacgaccgUGCCGAUCGg -3'
miRNA:   3'- -CCUGUCUAuCuGUGGg------ACGGCUGGCg -5'
19576 3' -55 NC_004686.1 + 39184 0.67 0.677161
Target:  5'- gGGcGCAGAggugGGGCGCa-UGaCCGGCCGUg -3'
miRNA:   3'- -CC-UGUCUa---UCUGUGggAC-GGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 40586 0.67 0.708348
Target:  5'- gGGACAGGUuccgugcccguugGGACACCggUUGCgacGCCGCc -3'
miRNA:   3'- -CCUGUCUA-------------UCUGUGG--GACGgc-UGGCG- -5'
19576 3' -55 NC_004686.1 + 41958 0.69 0.600907
Target:  5'- cGGACAGGgucGGccGCACCUUGUgGAUCGa -3'
miRNA:   3'- -CCUGUCUa--UC--UGUGGGACGgCUGGCg -5'
19576 3' -55 NC_004686.1 + 43461 0.67 0.677161
Target:  5'- --------cGAUugCCUGCCGAUCGCc -3'
miRNA:   3'- ccugucuauCUGugGGACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 45032 0.67 0.69765
Target:  5'- aGGACAGGUcGAaaucaACCCcuacUGCCGACagauccuCGCc -3'
miRNA:   3'- -CCUGUCUAuCUg----UGGG----ACGGCUG-------GCG- -5'
19576 3' -55 NC_004686.1 + 47067 0.68 0.666312
Target:  5'- gGGACAGccGGACGCCCUuauCCGGgaaGCg -3'
miRNA:   3'- -CCUGUCuaUCUGUGGGAc--GGCUgg-CG- -5'
19576 3' -55 NC_004686.1 + 49196 0.69 0.568432
Target:  5'- cGGAUGGAauGACACaCCc-CCGACCGUg -3'
miRNA:   3'- -CCUGUCUauCUGUG-GGacGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 51358 0.67 0.677161
Target:  5'- -uGCAGGUGGGCAgCCaguucuacGCCGAgUGCg -3'
miRNA:   3'- ccUGUCUAUCUGUgGGa-------CGGCUgGCG- -5'
19576 3' -55 NC_004686.1 + 54541 0.68 0.610706
Target:  5'- uGGuCGGGUuguucgaAGACACCCUGCCaa-CGUu -3'
miRNA:   3'- -CCuGUCUA-------UCUGUGGGACGGcugGCG- -5'
19576 3' -55 NC_004686.1 + 55601 0.7 0.494764
Target:  5'- cGugAGAU-GugGCCgacgaUGCCGAUCGCg -3'
miRNA:   3'- cCugUCUAuCugUGGg----ACGGCUGGCG- -5'
19576 3' -55 NC_004686.1 + 56089 0.68 0.611796
Target:  5'- cGGGCGGGUGGGCgACggUGCCGuugUCGCu -3'
miRNA:   3'- -CCUGUCUAUCUG-UGggACGGCu--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.