miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19581 3' -50.2 NC_004686.1 + 41182 0.66 0.946151
Target:  5'- uGUCGUCGAaGAAGUGGUcacggaacaucuGCCUcAACg -3'
miRNA:   3'- -CAGUAGCUcCUUCAUCA------------CGGGaUUGg -5'
19581 3' -50.2 NC_004686.1 + 41901 0.66 0.934719
Target:  5'- cUCGUCGaAGGAGGUGGaagGCCgggaaaucgugGGCCg -3'
miRNA:   3'- cAGUAGC-UCCUUCAUCa--CGGga---------UUGG- -5'
19581 3' -50.2 NC_004686.1 + 7618 0.66 0.930209
Target:  5'- cGUCuggGUCGGGGAAGUccacGG-GUCCUugcugguuuGACCa -3'
miRNA:   3'- -CAG---UAGCUCCUUCA----UCaCGGGA---------UUGG- -5'
19581 3' -50.2 NC_004686.1 + 39815 0.66 0.930209
Target:  5'- cGUCGUCGAGcAGGcGGgccGCCUgGGCCa -3'
miRNA:   3'- -CAGUAGCUCcUUCaUCa--CGGGaUUGG- -5'
19581 3' -50.2 NC_004686.1 + 55663 0.66 0.930209
Target:  5'- cGUCGUCGAuGGAcaGGUAGUcagcgucgacgGUgUUGGCCa -3'
miRNA:   3'- -CAGUAGCU-CCU--UCAUCA-----------CGgGAUUGG- -5'
19581 3' -50.2 NC_004686.1 + 8539 0.67 0.911604
Target:  5'- cUCAUCGAGGAAGU----CCC--ACCg -3'
miRNA:   3'- cAGUAGCUCCUUCAucacGGGauUGG- -5'
19581 3' -50.2 NC_004686.1 + 17334 0.68 0.874789
Target:  5'- -cCGUCGAGGAugcgcUAGggGCgCUGGCCa -3'
miRNA:   3'- caGUAGCUCCUuc---AUCa-CGgGAUUGG- -5'
19581 3' -50.2 NC_004686.1 + 11267 0.68 0.866595
Target:  5'- aUCGUCGAGGAAcauc-GCCCgacccgAACCg -3'
miRNA:   3'- cAGUAGCUCCUUcaucaCGGGa-----UUGG- -5'
19581 3' -50.2 NC_004686.1 + 54646 0.73 0.62074
Target:  5'- uGUCGUCGGGGAAGgugaacguuggcagGGUGUCUUcgaacaacccGACCa -3'
miRNA:   3'- -CAGUAGCUCCUUCa-------------UCACGGGA----------UUGG- -5'
19581 3' -50.2 NC_004686.1 + 15251 1.12 0.002273
Target:  5'- gGUCAUCGAGGAAGUAGUGCCCUAACCc -3'
miRNA:   3'- -CAGUAGCUCCUUCAUCACGGGAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.