miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19581 5' -57.2 NC_004686.1 + 56001 0.66 0.639105
Target:  5'- gCGGUCGauggauGUGCGGGGCggcagGCUGUUGAg -3'
miRNA:   3'- gGCUAGUc-----CAUGCCCCG-----UGGCAGCUa -5'
19581 5' -57.2 NC_004686.1 + 53281 0.66 0.628342
Target:  5'- aCCGGUaacaacuaccgcCGuGUACGGGGuCACCGauUCGAUg -3'
miRNA:   3'- -GGCUA------------GUcCAUGCCCC-GUGGC--AGCUA- -5'
19581 5' -57.2 NC_004686.1 + 2369 0.66 0.628342
Target:  5'- uUGGUCuGGUGCuGGGGUggacggguaagGCUGUUGAUg -3'
miRNA:   3'- gGCUAGuCCAUG-CCCCG-----------UGGCAGCUA- -5'
19581 5' -57.2 NC_004686.1 + 56109 0.66 0.606835
Target:  5'- gCGGcCGGGUugGcGGGUGCCGggCGGg -3'
miRNA:   3'- gGCUaGUCCAugC-CCCGUGGCa-GCUa -5'
19581 5' -57.2 NC_004686.1 + 12157 0.67 0.596108
Target:  5'- gCGGUCAGGccGCGGGGcCAgCGgCGGc -3'
miRNA:   3'- gGCUAGUCCa-UGCCCC-GUgGCaGCUa -5'
19581 5' -57.2 NC_004686.1 + 43471 0.67 0.564137
Target:  5'- uUCGAacgCAGGUcuuCGcGGCGCUGUCGGUg -3'
miRNA:   3'- -GGCUa--GUCCAu--GCcCCGUGGCAGCUA- -5'
19581 5' -57.2 NC_004686.1 + 19892 0.69 0.471747
Target:  5'- gCCGAU--GGUGCGGGGCcuGgUGUCGGc -3'
miRNA:   3'- -GGCUAguCCAUGCCCCG--UgGCAGCUa -5'
19581 5' -57.2 NC_004686.1 + 55504 0.69 0.461937
Target:  5'- gCCgGAUgAGGUACGcgaucGGCAUCGUCGGc -3'
miRNA:   3'- -GG-CUAgUCCAUGCc----CCGUGGCAGCUa -5'
19581 5' -57.2 NC_004686.1 + 18109 0.71 0.35356
Target:  5'- aCGAUCAucaacacuuUGCGGGGCACgGUCGGg -3'
miRNA:   3'- gGCUAGUcc-------AUGCCCCGUGgCAGCUa -5'
19581 5' -57.2 NC_004686.1 + 14900 0.72 0.321651
Target:  5'- cCCaGAUCGGGuccUugGGcGGCACgGUCGAc -3'
miRNA:   3'- -GG-CUAGUCC---AugCC-CCGUGgCAGCUa -5'
19581 5' -57.2 NC_004686.1 + 12446 0.75 0.19904
Target:  5'- gCCGAugccacaUCAGGgcaAUGGGGCACCGcCGGg -3'
miRNA:   3'- -GGCU-------AGUCCa--UGCCCCGUGGCaGCUa -5'
19581 5' -57.2 NC_004686.1 + 15217 1.08 0.000936
Target:  5'- gCCGAUCAGGUACGGGGCACCGUCGAUa -3'
miRNA:   3'- -GGCUAGUCCAUGCCCCGUGGCAGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.