miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19582 5' -61.3 NC_004686.1 + 4736 0.66 0.438469
Target:  5'- aGGCCGAGCGcaagaagaaacauCCGaauGUgCCCAaggaGGGCa -3'
miRNA:   3'- -CCGGCUCGU-------------GGCgu-CA-GGGUg---UCCGc -5'
19582 5' -61.3 NC_004686.1 + 7826 0.66 0.430157
Target:  5'- cGGUCG-GCAgaGgAGUCCCAagcgGGGCGc -3'
miRNA:   3'- -CCGGCuCGUggCgUCAGGGUg---UCCGC- -5'
19582 5' -61.3 NC_004686.1 + 31209 0.66 0.430157
Target:  5'- cGGCCGucGuCGCUGCGGgCgCGCAGGUu -3'
miRNA:   3'- -CCGGCu-C-GUGGCGUCaGgGUGUCCGc -5'
19582 5' -61.3 NC_004686.1 + 19050 0.66 0.430157
Target:  5'- gGGUCGGGUGCUGg---CCgGCAGGCGu -3'
miRNA:   3'- -CCGGCUCGUGGCgucaGGgUGUCCGC- -5'
19582 5' -61.3 NC_004686.1 + 48131 0.66 0.421031
Target:  5'- -aUCGAGCGcggaugauCCGCGuGUCCUGgAGGCGg -3'
miRNA:   3'- ccGGCUCGU--------GGCGU-CAGGGUgUCCGC- -5'
19582 5' -61.3 NC_004686.1 + 2216 0.66 0.412022
Target:  5'- cGCCGAuGCGuuGCGcgacuGUUCCcagACGGGCGg -3'
miRNA:   3'- cCGGCU-CGUggCGU-----CAGGG---UGUCCGC- -5'
19582 5' -61.3 NC_004686.1 + 14122 0.66 0.412022
Target:  5'- cGGCCcgaccagcGGGCACCGCAauagUCCGC-GGUGa -3'
miRNA:   3'- -CCGG--------CUCGUGGCGUca--GGGUGuCCGC- -5'
19582 5' -61.3 NC_004686.1 + 22752 0.66 0.394368
Target:  5'- cGCCGcGGCuAUCGCGGUCaCCGguGGUc -3'
miRNA:   3'- cCGGC-UCG-UGGCGUCAG-GGUguCCGc -5'
19582 5' -61.3 NC_004686.1 + 4075 0.67 0.385727
Target:  5'- gGGCCGGguGCGCCGCAuGUaUCCGCGuGCc -3'
miRNA:   3'- -CCGGCU--CGUGGCGU-CA-GGGUGUcCGc -5'
19582 5' -61.3 NC_004686.1 + 8300 0.67 0.377211
Target:  5'- uGGCUGGGCcugGCCaccggGCAGgCCCuCAGGCc -3'
miRNA:   3'- -CCGGCUCG---UGG-----CGUCaGGGuGUCCGc -5'
19582 5' -61.3 NC_004686.1 + 38866 0.67 0.368823
Target:  5'- -cCCGuGCAgCCGCAGUgCCUGCAgugGGCGu -3'
miRNA:   3'- ccGGCuCGU-GGCGUCA-GGGUGU---CCGC- -5'
19582 5' -61.3 NC_004686.1 + 15692 0.67 0.360564
Target:  5'- cGGCUGA-CGCCGCAG-Ca-GCAGGCc -3'
miRNA:   3'- -CCGGCUcGUGGCGUCaGggUGUCCGc -5'
19582 5' -61.3 NC_004686.1 + 22135 0.67 0.344436
Target:  5'- cGGCCucggcGGCACCGCuGUCaUCACcGGCc -3'
miRNA:   3'- -CCGGc----UCGUGGCGuCAG-GGUGuCCGc -5'
19582 5' -61.3 NC_004686.1 + 12461 0.68 0.328833
Target:  5'- gGGCaaugGGGCACCGCcGggaCCGgGGGCGc -3'
miRNA:   3'- -CCGg---CUCGUGGCGuCag-GGUgUCCGC- -5'
19582 5' -61.3 NC_004686.1 + 1438 0.68 0.327302
Target:  5'- uGGCgGAuauugauGCGCCGCGGUUCUgggagaaGCuGGCGg -3'
miRNA:   3'- -CCGgCU-------CGUGGCGUCAGGG-------UGuCCGC- -5'
19582 5' -61.3 NC_004686.1 + 36330 0.68 0.313758
Target:  5'- aGGuuGAGCgGCUGC-GUCCCA-GGGUGa -3'
miRNA:   3'- -CCggCUCG-UGGCGuCAGGGUgUCCGC- -5'
19582 5' -61.3 NC_004686.1 + 26029 0.68 0.297077
Target:  5'- -aCCGAGCGCCaaacaGUGGUCCCAgcgcugcugccgguCGGGCa -3'
miRNA:   3'- ccGGCUCGUGG-----CGUCAGGGU--------------GUCCGc -5'
19582 5' -61.3 NC_004686.1 + 48410 0.69 0.292138
Target:  5'- -aCCGAGguCCGCcgugAGUUCgACGGGCGc -3'
miRNA:   3'- ccGGCUCguGGCG----UCAGGgUGUCCGC- -5'
19582 5' -61.3 NC_004686.1 + 36762 0.69 0.285195
Target:  5'- aGCCG-GCACCGCAG----ACGGGCGu -3'
miRNA:   3'- cCGGCuCGUGGCGUCagggUGUCCGC- -5'
19582 5' -61.3 NC_004686.1 + 9788 0.7 0.234294
Target:  5'- uGCCGc-CACUGCGGUCgCCGCcGGCGu -3'
miRNA:   3'- cCGGCucGUGGCGUCAG-GGUGuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.