miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19583 3' -49.3 NC_004686.1 + 16512 1.16 0.001735
Target:  5'- cCCAAAAAAACCCCGUCCGUGAUGGGCg -3'
miRNA:   3'- -GGUUUUUUUGGGGCAGGCACUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 51324 0.76 0.512576
Target:  5'- gCCAAAGAAGCCCCGccaccuauguacaUCgaaGUGcagGUGGGCa -3'
miRNA:   3'- -GGUUUUUUUGGGGC-------------AGg--CAC---UACCCG- -5'
19583 3' -49.3 NC_004686.1 + 21720 0.75 0.613542
Target:  5'- aCUGGAGGAACCCCGUcggucgCCGUGAa-GGCu -3'
miRNA:   3'- -GGUUUUUUUGGGGCA------GGCACUacCCG- -5'
19583 3' -49.3 NC_004686.1 + 25033 0.73 0.703577
Target:  5'- uUCAAcgcAGAAACCCCGcgcacCCGaGGUGGGUg -3'
miRNA:   3'- -GGUU---UUUUUGGGGCa----GGCaCUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 20446 0.71 0.798865
Target:  5'- gCGAAAAugcccGCCCCGUaCGcgguuggucaUGAUGGGCu -3'
miRNA:   3'- gGUUUUUu----UGGGGCAgGC----------ACUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 36679 0.71 0.808692
Target:  5'- -gAAGAGAACgCCCGUCUGcGGUGccGGCu -3'
miRNA:   3'- ggUUUUUUUG-GGGCAGGCaCUAC--CCG- -5'
19583 3' -49.3 NC_004686.1 + 49198 0.71 0.818324
Target:  5'- cCCGGAugGAaugacacacCCCCGaCCGUGAUGGcGUu -3'
miRNA:   3'- -GGUUUuuUU---------GGGGCaGGCACUACC-CG- -5'
19583 3' -49.3 NC_004686.1 + 51117 0.69 0.871419
Target:  5'- aCCuGGAcAGCCUgGaCUGUGGUGGGUa -3'
miRNA:   3'- -GGuUUUuUUGGGgCaGGCACUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 15703 0.68 0.908572
Target:  5'- uCCAccGGAACCCaCGUCCcaGGUGaGGUc -3'
miRNA:   3'- -GGUuuUUUUGGG-GCAGGcaCUAC-CCG- -5'
19583 3' -49.3 NC_004686.1 + 12545 0.68 0.921447
Target:  5'- gCCGGu--GACCCCGgagcagaCCGacUGGUGGcGCa -3'
miRNA:   3'- -GGUUuuuUUGGGGCa------GGC--ACUACC-CG- -5'
19583 3' -49.3 NC_004686.1 + 15658 0.68 0.921447
Target:  5'- cCCGGAGccGAAUCCUGcCCGcGAUGcGGUg -3'
miRNA:   3'- -GGUUUU--UUUGGGGCaGGCaCUAC-CCG- -5'
19583 3' -49.3 NC_004686.1 + 13390 0.68 0.926861
Target:  5'- aCCGGcgGAACCCCGacgcugccggacuUCuCGUG--GGGCg -3'
miRNA:   3'- -GGUUuuUUUGGGGC-------------AG-GCACuaCCCG- -5'
19583 3' -49.3 NC_004686.1 + 44732 0.68 0.927448
Target:  5'- uCCGAuguGAGGAUgaUCUGUCCGUu-UGGGCg -3'
miRNA:   3'- -GGUU---UUUUUG--GGGCAGGCAcuACCCG- -5'
19583 3' -49.3 NC_004686.1 + 24361 0.68 0.927448
Target:  5'- gCCGuguGGAGCCCCGUCaugaacgGUGAc-GGCa -3'
miRNA:   3'- -GGUuu-UUUUGGGGCAGg------CACUacCCG- -5'
19583 3' -49.3 NC_004686.1 + 19547 0.68 0.933156
Target:  5'- gCCGccGAcGCCgCCGgaaacggUUGUGGUGGGCa -3'
miRNA:   3'- -GGUuuUUuUGG-GGCa------GGCACUACCCG- -5'
19583 3' -49.3 NC_004686.1 + 35718 0.67 0.938044
Target:  5'- uCCGAAuuGGCCUacuuguaCGUCgGUGAUGGa- -3'
miRNA:   3'- -GGUUUuuUUGGG-------GCAGgCACUACCcg -5'
19583 3' -49.3 NC_004686.1 + 5111 0.67 0.943699
Target:  5'- aCCGAc--GACCUCG-CCGcGAggcgGGGCg -3'
miRNA:   3'- -GGUUuuuUUGGGGCaGGCaCUa---CCCG- -5'
19583 3' -49.3 NC_004686.1 + 50913 0.67 0.953093
Target:  5'- uCCAcGAGAGCCCUGUuuGUcc--GGCg -3'
miRNA:   3'- -GGUuUUUUUGGGGCAggCAcuacCCG- -5'
19583 3' -49.3 NC_004686.1 + 48230 0.67 0.953093
Target:  5'- uCCGGGGAAGCCgCUGcCCGgucgGGUcauccacuucGGGCg -3'
miRNA:   3'- -GGUUUUUUUGG-GGCaGGCa---CUA----------CCCG- -5'
19583 3' -49.3 NC_004686.1 + 39815 0.67 0.957368
Target:  5'- gCCGcAAGuuCCCCGgUCGUGGcUGGGa -3'
miRNA:   3'- -GGUuUUUuuGGGGCaGGCACU-ACCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.