Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19583 | 3' | -49.3 | NC_004686.1 | + | 5111 | 0.67 | 0.943699 |
Target: 5'- aCCGAc--GACCUCG-CCGcGAggcgGGGCg -3' miRNA: 3'- -GGUUuuuUUGGGGCaGGCaCUa---CCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 5945 | 0.66 | 0.961369 |
Target: 5'- aCCAGAAc-GgUCUGUCCGUuggGGGCg -3' miRNA: 3'- -GGUUUUuuUgGGGCAGGCAcuaCCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 8276 | 0.66 | 0.961369 |
Target: 5'- aCAGuccuGCCCgGugguuuUCCGUGGcUGGGCc -3' miRNA: 3'- gGUUuuuuUGGGgC------AGGCACU-ACCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 11926 | 0.66 | 0.967901 |
Target: 5'- gCCGGugggcaaCCCGUCCagggcaGUGAUGGuGCc -3' miRNA: 3'- -GGUUuuuuug-GGGCAGG------CACUACC-CG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 12545 | 0.68 | 0.921447 |
Target: 5'- gCCGGu--GACCCCGgagcagaCCGacUGGUGGcGCa -3' miRNA: 3'- -GGUUuuuUUGGGGCa------GGC--ACUACC-CG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 13390 | 0.68 | 0.926861 |
Target: 5'- aCCGGcgGAACCCCGacgcugccggacuUCuCGUG--GGGCg -3' miRNA: 3'- -GGUUuuUUUGGGGC-------------AG-GCACuaCCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 15658 | 0.68 | 0.921447 |
Target: 5'- cCCGGAGccGAAUCCUGcCCGcGAUGcGGUg -3' miRNA: 3'- -GGUUUU--UUUGGGGCaGGCaCUAC-CCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 15703 | 0.68 | 0.908572 |
Target: 5'- uCCAccGGAACCCaCGUCCcaGGUGaGGUc -3' miRNA: 3'- -GGUuuUUUUGGG-GCAGGcaCUAC-CCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 16290 | 0.66 | 0.961369 |
Target: 5'- gCUAGAcauGACUCCGUUgGUGG-GGGUu -3' miRNA: 3'- -GGUUUuu-UUGGGGCAGgCACUaCCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 16512 | 1.16 | 0.001735 |
Target: 5'- cCCAAAAAAACCCCGUCCGUGAUGGGCg -3' miRNA: 3'- -GGUUUUUUUGGGGCAGGCACUACCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 19547 | 0.68 | 0.933156 |
Target: 5'- gCCGccGAcGCCgCCGgaaacggUUGUGGUGGGCa -3' miRNA: 3'- -GGUuuUUuUGG-GGCa------GGCACUACCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 20446 | 0.71 | 0.798865 |
Target: 5'- gCGAAAAugcccGCCCCGUaCGcgguuggucaUGAUGGGCu -3' miRNA: 3'- gGUUUUUu----UGGGGCAgGC----------ACUACCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 21639 | 0.66 | 0.974769 |
Target: 5'- cCCAcGAAAGCaa-GUCUGUucauugauGGUGGGCg -3' miRNA: 3'- -GGUuUUUUUGgggCAGGCA--------CUACCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 21720 | 0.75 | 0.613542 |
Target: 5'- aCUGGAGGAACCCCGUcggucgCCGUGAa-GGCu -3' miRNA: 3'- -GGUUUUUUUGGGGCA------GGCACUacCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 22471 | 0.66 | 0.965461 |
Target: 5'- aCCAucaucAGCCCCGccccggcggcgaugaCCGUcaccGGUGGGCa -3' miRNA: 3'- -GGUuuuu-UUGGGGCa--------------GGCA----CUACCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 23926 | 0.66 | 0.965102 |
Target: 5'- gCGAAGGugUCCCGUCCGaaucGAUcgucaGGGUa -3' miRNA: 3'- gGUUUUUuuGGGGCAGGCa---CUA-----CCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 24361 | 0.68 | 0.927448 |
Target: 5'- gCCGuguGGAGCCCCGUCaugaacgGUGAc-GGCa -3' miRNA: 3'- -GGUuu-UUUUGGGGCAGg------CACUacCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 25033 | 0.73 | 0.703577 |
Target: 5'- uUCAAcgcAGAAACCCCGcgcacCCGaGGUGGGUg -3' miRNA: 3'- -GGUU---UUUUUGGGGCa----GGCaCUACCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 27466 | 0.66 | 0.971794 |
Target: 5'- gCCAAG--GACgCUaUCUGUGcGUGGGCa -3' miRNA: 3'- -GGUUUuuUUGgGGcAGGCAC-UACCCG- -5' |
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19583 | 3' | -49.3 | NC_004686.1 | + | 33379 | 0.66 | 0.974769 |
Target: 5'- --------cCCCCGa-CGUGAUGGGUc -3' miRNA: 3'- gguuuuuuuGGGGCagGCACUACCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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