miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19583 5' -54.6 NC_004686.1 + 16470 1.12 0.000853
Target:  5'- uGGGACCGUGACGACGAAGCACCGAUCa -3'
miRNA:   3'- -CCCUGGCACUGCUGCUUCGUGGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 28229 0.79 0.180338
Target:  5'- gGGGA-CGUGACGAugUGGAGCGCCGAc- -3'
miRNA:   3'- -CCCUgGCACUGCU--GCUUCGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 24776 0.72 0.419912
Target:  5'- aGGAUCGUGACGACGggGauCAgCGGc- -3'
miRNA:   3'- cCCUGGCACUGCUGCuuC--GUgGCUag -5'
19583 5' -54.6 NC_004686.1 + 42699 0.71 0.519237
Target:  5'- cGGGGuuGUGGCGggauGCGAAG-GCCGGUg -3'
miRNA:   3'- -CCCUggCACUGC----UGCUUCgUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 32099 0.71 0.519237
Target:  5'- gGGGugugGCCGUGugGcCGcAAGCAUgGGUCu -3'
miRNA:   3'- -CCC----UGGCACugCuGC-UUCGUGgCUAG- -5'
19583 5' -54.6 NC_004686.1 + 40795 0.71 0.520281
Target:  5'- aGGGGCCGccuuugcaguuccugGACcGCGAAGCGCUGGa- -3'
miRNA:   3'- -CCCUGGCa--------------CUGcUGCUUCGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 16353 0.7 0.550878
Target:  5'- cGGuGACgGUGGCGAUucAGCAUCGggCg -3'
miRNA:   3'- -CC-CUGgCACUGCUGcuUCGUGGCuaG- -5'
19583 5' -54.6 NC_004686.1 + 30033 0.69 0.583084
Target:  5'- cGGGGucggUGUGGCGGCGGcuUGCCGAUCa -3'
miRNA:   3'- -CCCUg---GCACUGCUGCUucGUGGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 11145 0.69 0.583084
Target:  5'- cGGGGCauaugcguugCGUG-CGGCGAuccGCGCCGGUg -3'
miRNA:   3'- -CCCUG----------GCACuGCUGCUu--CGUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 28996 0.69 0.59391
Target:  5'- gGGGugUGUGuCGGCGugggguGGUGCUGAUUa -3'
miRNA:   3'- -CCCugGCACuGCUGCu-----UCGUGGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 52639 0.69 0.604767
Target:  5'- aGGGAUCGUGGugUGGCGAaggugGGCAUUggGAUCa -3'
miRNA:   3'- -CCCUGGCACU--GCUGCU-----UCGUGG--CUAG- -5'
19583 5' -54.6 NC_004686.1 + 49139 0.69 0.614559
Target:  5'- cGGGAUugcaCGUGgcuguugaucugcGCGACGggGaCGCCGAguUCa -3'
miRNA:   3'- -CCCUG----GCAC-------------UGCUGCuuC-GUGGCU--AG- -5'
19583 5' -54.6 NC_004686.1 + 38558 0.69 0.615648
Target:  5'- cGGAuUCGaUGACGGCGAugaACCGGUCa -3'
miRNA:   3'- cCCU-GGC-ACUGCUGCUucgUGGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 56096 0.68 0.659217
Target:  5'- cGGGuGCCGggcggGugGGCGAcGGUGCCGuuGUCg -3'
miRNA:   3'- -CCC-UGGCa----CugCUGCU-UCGUGGC--UAG- -5'
19583 5' -54.6 NC_004686.1 + 40982 0.68 0.659217
Target:  5'- aGGGACUGcUGAcCGACaaaGAGGuCGCCGAc- -3'
miRNA:   3'- -CCCUGGC-ACU-GCUG---CUUC-GUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 38492 0.68 0.670073
Target:  5'- cGGGGCCGaUGaugcccGCGGCGAugAGCAgCGGcaUCg -3'
miRNA:   3'- -CCCUGGC-AC------UGCUGCU--UCGUgGCU--AG- -5'
19583 5' -54.6 NC_004686.1 + 26431 0.68 0.670073
Target:  5'- cGGGGCgGgggGugGGCcAGGCgcauucgauGCCGAUCa -3'
miRNA:   3'- -CCCUGgCa--CugCUGcUUCG---------UGGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 37728 0.68 0.680893
Target:  5'- cGGACCGgGGCGucgUGGAGCGCCa--- -3'
miRNA:   3'- cCCUGGCaCUGCu--GCUUCGUGGcuag -5'
19583 5' -54.6 NC_004686.1 + 54915 0.68 0.690593
Target:  5'- cGGGCaacaaguucucguCGUgGACGACGGAcGCACCGGa- -3'
miRNA:   3'- cCCUG-------------GCA-CUGCUGCUU-CGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 47529 0.67 0.706657
Target:  5'- cGGGAggcucgugagaaugcCCGUGAUGcggaguUGGAGCGCCGGc- -3'
miRNA:   3'- -CCCU---------------GGCACUGCu-----GCUUCGUGGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.