miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19583 5' -54.6 NC_004686.1 + 28525 0.66 0.794506
Target:  5'- aGGGCaGUaGugG-UGAAGCACCGGUg -3'
miRNA:   3'- cCCUGgCA-CugCuGCUUCGUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 72 0.67 0.723613
Target:  5'- cGGGAUCGUcGGCGGgcUGAGGUucGCCGGc- -3'
miRNA:   3'- -CCCUGGCA-CUGCU--GCUUCG--UGGCUag -5'
19583 5' -54.6 NC_004686.1 + 7913 0.67 0.734097
Target:  5'- aGGaGACCGUGGCGgucaccugcuGCGAGuCGaauCCGGUCg -3'
miRNA:   3'- -CC-CUGGCACUGC----------UGCUUcGU---GGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 26729 0.67 0.743448
Target:  5'- --cGCCGUGAuCGGCGAgaaacucGGCAUCGAa- -3'
miRNA:   3'- cccUGGCACU-GCUGCU-------UCGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 33837 0.67 0.744481
Target:  5'- aGGGCUGcGACGGCGAcuuGgGCCGGg- -3'
miRNA:   3'- cCCUGGCaCUGCUGCUu--CgUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 49311 0.67 0.754754
Target:  5'- cGGACCGacguGCGACGAAGCGaacgCGcUCa -3'
miRNA:   3'- cCCUGGCac--UGCUGCUUCGUg---GCuAG- -5'
19583 5' -54.6 NC_004686.1 + 8020 0.66 0.764903
Target:  5'- -cGAuCCGUcACGAUGAGGCGCCGc-- -3'
miRNA:   3'- ccCU-GGCAcUGCUGCUUCGUGGCuag -5'
19583 5' -54.6 NC_004686.1 + 22359 0.66 0.764903
Target:  5'- cGGGcggcaGCgGUGACGgcuccaaugGCGGcaccGGCACCGAUg -3'
miRNA:   3'- -CCC-----UGgCACUGC---------UGCU----UCGUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 13929 0.66 0.774919
Target:  5'- cGGGGCCG--GCGcaaacCGAGGUGCCGuUCg -3'
miRNA:   3'- -CCCUGGCacUGCu----GCUUCGUGGCuAG- -5'
19583 5' -54.6 NC_004686.1 + 49034 0.67 0.709852
Target:  5'- aGGGGCCGUGgcuguucauucccgGCGgcaGCGAGGaCGCCcugguGGUCa -3'
miRNA:   3'- -CCCUGGCAC--------------UGC---UGCUUC-GUGG-----CUAG- -5'
19583 5' -54.6 NC_004686.1 + 47529 0.67 0.706657
Target:  5'- cGGGAggcucgugagaaugcCCGUGAUGcggaguUGGAGCGCCGGc- -3'
miRNA:   3'- -CCCU---------------GGCACUGCu-----GCUUCGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 54915 0.68 0.690593
Target:  5'- cGGGCaacaaguucucguCGUgGACGACGGAcGCACCGGa- -3'
miRNA:   3'- cCCUG-------------GCA-CUGCUGCUU-CGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 42699 0.71 0.519237
Target:  5'- cGGGGuuGUGGCGggauGCGAAG-GCCGGUg -3'
miRNA:   3'- -CCCUggCACUGC----UGCUUCgUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 40795 0.71 0.520281
Target:  5'- aGGGGCCGccuuugcaguuccugGACcGCGAAGCGCUGGa- -3'
miRNA:   3'- -CCCUGGCa--------------CUGcUGCUUCGUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 16353 0.7 0.550878
Target:  5'- cGGuGACgGUGGCGAUucAGCAUCGggCg -3'
miRNA:   3'- -CC-CUGgCACUGCUGcuUCGUGGCuaG- -5'
19583 5' -54.6 NC_004686.1 + 11145 0.69 0.583084
Target:  5'- cGGGGCauaugcguugCGUG-CGGCGAuccGCGCCGGUg -3'
miRNA:   3'- -CCCUG----------GCACuGCUGCUu--CGUGGCUAg -5'
19583 5' -54.6 NC_004686.1 + 28996 0.69 0.59391
Target:  5'- gGGGugUGUGuCGGCGugggguGGUGCUGAUUa -3'
miRNA:   3'- -CCCugGCACuGCUGCu-----UCGUGGCUAG- -5'
19583 5' -54.6 NC_004686.1 + 49139 0.69 0.614559
Target:  5'- cGGGAUugcaCGUGgcuguugaucugcGCGACGggGaCGCCGAguUCa -3'
miRNA:   3'- -CCCUG----GCAC-------------UGCUGCuuC-GUGGCU--AG- -5'
19583 5' -54.6 NC_004686.1 + 40982 0.68 0.659217
Target:  5'- aGGGACUGcUGAcCGACaaaGAGGuCGCCGAc- -3'
miRNA:   3'- -CCCUGGC-ACU-GCUG---CUUC-GUGGCUag -5'
19583 5' -54.6 NC_004686.1 + 37728 0.68 0.680893
Target:  5'- cGGACCGgGGCGucgUGGAGCGCCa--- -3'
miRNA:   3'- cCCUGGCaCUGCu--GCUUCGUGGcuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.