Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19585 | 5' | -56.3 | NC_004686.1 | + | 16944 | 1.09 | 0.000702 |
Target: 5'- gUGUUGCCGGCCGCCAACGCAACACUGg -3' miRNA: 3'- -ACAACGGCCGGCGGUUGCGUUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 24529 | 0.78 | 0.121085 |
Target: 5'- aUGgUGgCGGCCGCCGcCGCAGCGCUu -3' miRNA: 3'- -ACaACgGCCGGCGGUuGCGUUGUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 979 | 0.76 | 0.168833 |
Target: 5'- -uUUGCCGGCCuGCCG-CGCAAUGCUc -3' miRNA: 3'- acAACGGCCGG-CGGUuGCGUUGUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 33569 | 0.73 | 0.271776 |
Target: 5'- --gUGCuCGGCCuGCCAGCGCAGC-Ca- -3' miRNA: 3'- acaACG-GCCGG-CGGUUGCGUUGuGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 29201 | 0.72 | 0.322941 |
Target: 5'- ---aGCgCGGcCCGCCGACGCcgaucccGACGCUGc -3' miRNA: 3'- acaaCG-GCC-GGCGGUUGCG-------UUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 10749 | 0.72 | 0.323733 |
Target: 5'- uUGUUGCCGGCa-CCccCGCGGCGCa- -3' miRNA: 3'- -ACAACGGCCGgcGGuuGCGUUGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 9256 | 0.69 | 0.438702 |
Target: 5'- gGUgGCCGGUgGCUAACGgAACugaACUGg -3' miRNA: 3'- aCAaCGGCCGgCGGUUGCgUUG---UGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 47940 | 0.69 | 0.438702 |
Target: 5'- gGUUcgGuuGGCuCGCCGGCGCGACGg-- -3' miRNA: 3'- aCAA--CggCCG-GCGGUUGCGUUGUgac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 3811 | 0.69 | 0.438702 |
Target: 5'- ---cGCCGccGCCGCCAugGCGGCuucGCUc -3' miRNA: 3'- acaaCGGC--CGGCGGUugCGUUG---UGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 9787 | 0.69 | 0.448476 |
Target: 5'- --cUGCCGccacugcggucGCCGCCGGCGUcccCACUGg -3' miRNA: 3'- acaACGGC-----------CGGCGGUUGCGuu-GUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 16865 | 0.69 | 0.448476 |
Target: 5'- gUGUUGCguUGGCgGCCG--GCAACACUa -3' miRNA: 3'- -ACAACG--GCCGgCGGUugCGUUGUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 25907 | 0.69 | 0.454399 |
Target: 5'- cGUUGaucugucCCGGCCgcggGCCGGCGCAcagccaguaccaggACGCUGc -3' miRNA: 3'- aCAAC-------GGCCGG----CGGUUGCGU--------------UGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 12075 | 0.69 | 0.478501 |
Target: 5'- gUGUUGCCGG-CGCCGGCGgGAa--UGu -3' miRNA: 3'- -ACAACGGCCgGCGGUUGCgUUgugAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 4033 | 0.69 | 0.478501 |
Target: 5'- -uUUGCaucauGGUCGCCuccCGCGGCGCUGu -3' miRNA: 3'- acAACGg----CCGGCGGuu-GCGUUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 33137 | 0.68 | 0.4877 |
Target: 5'- aGUUGCCuauGCCGCCGgggcuagccaccaACGCcACACa- -3' miRNA: 3'- aCAACGGc--CGGCGGU-------------UGCGuUGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 54869 | 0.68 | 0.495947 |
Target: 5'- ---cGCCGGcCCGCCAAC-CugaaaccgucaucgAACACUGg -3' miRNA: 3'- acaaCGGCC-GGCGGUUGcG--------------UUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 49960 | 0.68 | 0.509481 |
Target: 5'- --aUGCgGGCCGaCCGGCGCcgUACg- -3' miRNA: 3'- acaACGgCCGGC-GGUUGCGuuGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 21166 | 0.68 | 0.530594 |
Target: 5'- cGUUGuuCCGcGCCGCgGGgGCuGGCACUGg -3' miRNA: 3'- aCAAC--GGC-CGGCGgUUgCG-UUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 28684 | 0.67 | 0.562828 |
Target: 5'- ---aGCCu-CCGCCAACGCAGCAg-- -3' miRNA: 3'- acaaCGGccGGCGGUUGCGUUGUgac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 39747 | 0.67 | 0.562828 |
Target: 5'- cUGaUGCCGuGCCGCacccucaccCGUGACACUGu -3' miRNA: 3'- -ACaACGGC-CGGCGguu------GCGUUGUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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