Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19585 | 5' | -56.3 | NC_004686.1 | + | 10749 | 0.72 | 0.323733 |
Target: 5'- uUGUUGCCGGCa-CCccCGCGGCGCa- -3' miRNA: 3'- -ACAACGGCCGgcGGuuGCGUUGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 52887 | 0.66 | 0.66162 |
Target: 5'- ---cGUCGGgCGCCAggaucaugcgGCGCAugGCUc -3' miRNA: 3'- acaaCGGCCgGCGGU----------UGCGUugUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 33874 | 0.66 | 0.66162 |
Target: 5'- ---gGCCGGCCGCgAGgGCGAgGaUGa -3' miRNA: 3'- acaaCGGCCGGCGgUUgCGUUgUgAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 40785 | 0.66 | 0.638501 |
Target: 5'- uUGUUGUCugaggGGCCGCCuuugcaguuccugGAcCGCGaaGCGCUGg -3' miRNA: 3'- -ACAACGG-----CCGGCGG-------------UU-GCGU--UGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 18458 | 0.66 | 0.617558 |
Target: 5'- cGUggcuuCCGGUgaCGCagAACGCGACGCUGg -3' miRNA: 3'- aCAac---GGCCG--GCGg-UUGCGUUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 5517 | 0.66 | 0.617558 |
Target: 5'- ---cGCCGGCC-UgAACGCGGCGgUGu -3' miRNA: 3'- acaaCGGCCGGcGgUUGCGUUGUgAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 53554 | 0.67 | 0.573695 |
Target: 5'- ----aCCGGCCGgCAGCGCGAacCGCUc -3' miRNA: 3'- acaacGGCCGGCgGUUGCGUU--GUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 21166 | 0.68 | 0.530594 |
Target: 5'- cGUUGuuCCGcGCCGCgGGgGCuGGCACUGg -3' miRNA: 3'- aCAAC--GGC-CGGCGgUUgCG-UUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 49960 | 0.68 | 0.509481 |
Target: 5'- --aUGCgGGCCGaCCGGCGCcgUACg- -3' miRNA: 3'- acaACGgCCGGC-GGUUGCGuuGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 54869 | 0.68 | 0.495947 |
Target: 5'- ---cGCCGGcCCGCCAAC-CugaaaccgucaucgAACACUGg -3' miRNA: 3'- acaaCGGCC-GGCGGUUGcG--------------UUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 9256 | 0.69 | 0.438702 |
Target: 5'- gGUgGCCGGUgGCUAACGgAACugaACUGg -3' miRNA: 3'- aCAaCGGCCGgCGGUUGCgUUG---UGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 47940 | 0.69 | 0.438702 |
Target: 5'- gGUUcgGuuGGCuCGCCGGCGCGACGg-- -3' miRNA: 3'- aCAA--CggCCG-GCGGUUGCGUUGUgac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 9787 | 0.69 | 0.448476 |
Target: 5'- --cUGCCGccacugcggucGCCGCCGGCGUcccCACUGg -3' miRNA: 3'- acaACGGC-----------CGGCGGUUGCGuu-GUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 16865 | 0.69 | 0.448476 |
Target: 5'- gUGUUGCguUGGCgGCCG--GCAACACUa -3' miRNA: 3'- -ACAACG--GCCGgCGGUugCGUUGUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 4033 | 0.69 | 0.478501 |
Target: 5'- -uUUGCaucauGGUCGCCuccCGCGGCGCUGu -3' miRNA: 3'- acAACGg----CCGGCGGuu-GCGUUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 33137 | 0.68 | 0.4877 |
Target: 5'- aGUUGCCuauGCCGCCGgggcuagccaccaACGCcACACa- -3' miRNA: 3'- aCAACGGc--CGGCGGU-------------UGCGuUGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 22158 | 0.66 | 0.639603 |
Target: 5'- -uUUGCCgcccuGGCCGCCGuucgcggugaGCGACACg- -3' miRNA: 3'- acAACGG-----CCGGCGGUug--------CGUUGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 24529 | 0.78 | 0.121085 |
Target: 5'- aUGgUGgCGGCCGCCGcCGCAGCGCUu -3' miRNA: 3'- -ACaACgGCCGGCGGUuGCGUUGUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 979 | 0.76 | 0.168833 |
Target: 5'- -uUUGCCGGCCuGCCG-CGCAAUGCUc -3' miRNA: 3'- acAACGGCCGG-CGGUuGCGUUGUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 33569 | 0.73 | 0.271776 |
Target: 5'- --gUGCuCGGCCuGCCAGCGCAGC-Ca- -3' miRNA: 3'- acaACG-GCCGG-CGGUUGCGUUGuGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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