Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19585 | 5' | -56.3 | NC_004686.1 | + | 11234 | 0.66 | 0.628579 |
Target: 5'- ---gGCgCGGaUCGCCGcACGCAACGCa- -3' miRNA: 3'- acaaCG-GCC-GGCGGU-UGCGUUGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 483 | 0.66 | 0.628579 |
Target: 5'- ---cGCCGGUugaccgcccggCGUCGGCGUAACGCg- -3' miRNA: 3'- acaaCGGCCG-----------GCGGUUGCGUUGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 56129 | 0.66 | 0.639603 |
Target: 5'- --gUGCCGaaCCGCCAG-GCGACGCg- -3' miRNA: 3'- acaACGGCc-GGCGGUUgCGUUGUGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 40710 | 0.66 | 0.639603 |
Target: 5'- cGUUcCCGGCCGCCcuggucgaacGugGCGGCGu-- -3' miRNA: 3'- aCAAcGGCCGGCGG----------UugCGUUGUgac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 28684 | 0.67 | 0.562828 |
Target: 5'- ---aGCCu-CCGCCAACGCAGCAg-- -3' miRNA: 3'- acaaCGGccGGCGGUUGCGUUGUgac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 39747 | 0.67 | 0.562828 |
Target: 5'- cUGaUGCCGuGCCGCacccucaccCGUGACACUGu -3' miRNA: 3'- -ACaACGGC-CGGCGguu------GCGUUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 16944 | 1.09 | 0.000702 |
Target: 5'- gUGUUGCCGGCCGCCAACGCAACACUGg -3' miRNA: 3'- -ACAACGGCCGGCGGUUGCGUUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 24529 | 0.78 | 0.121085 |
Target: 5'- aUGgUGgCGGCCGCCGcCGCAGCGCUu -3' miRNA: 3'- -ACaACgGCCGGCGGUuGCGUUGUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 979 | 0.76 | 0.168833 |
Target: 5'- -uUUGCCGGCCuGCCG-CGCAAUGCUc -3' miRNA: 3'- acAACGGCCGG-CGGUuGCGUUGUGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 33569 | 0.73 | 0.271776 |
Target: 5'- --gUGCuCGGCCuGCCAGCGCAGC-Ca- -3' miRNA: 3'- acaACG-GCCGG-CGGUUGCGUUGuGac -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 29201 | 0.72 | 0.322941 |
Target: 5'- ---aGCgCGGcCCGCCGACGCcgaucccGACGCUGc -3' miRNA: 3'- acaaCG-GCC-GGCGGUUGCG-------UUGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 3811 | 0.69 | 0.438702 |
Target: 5'- ---cGCCGccGCCGCCAugGCGGCuucGCUc -3' miRNA: 3'- acaaCGGC--CGGCGGUugCGUUG---UGAc -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 25907 | 0.69 | 0.454399 |
Target: 5'- cGUUGaucugucCCGGCCgcggGCCGGCGCAcagccaguaccaggACGCUGc -3' miRNA: 3'- aCAAC-------GGCCGG----CGGUUGCGU--------------UGUGAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 12075 | 0.69 | 0.478501 |
Target: 5'- gUGUUGCCGG-CGCCGGCGgGAa--UGu -3' miRNA: 3'- -ACAACGGCCgGCGGUUGCgUUgugAC- -5' |
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19585 | 5' | -56.3 | NC_004686.1 | + | 22158 | 0.66 | 0.639603 |
Target: 5'- -uUUGCCgcccuGGCCGCCGuucgcggugaGCGACACg- -3' miRNA: 3'- acAACGG-----CCGGCGGUug--------CGUUGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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