miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19590 3' -60.8 NC_004686.1 + 21827 0.66 0.426378
Target:  5'- gGUGcGCCu-CgGCGgcGCGGGcGCGGGCGg -3'
miRNA:   3'- -UAC-UGGuuGgCGCa-UGCCC-CGCCCGU- -5'
19590 3' -60.8 NC_004686.1 + 3527 0.66 0.390358
Target:  5'- cAUGGCCGacaaacGCCGCGUuCaGGGcCGcGGCAc -3'
miRNA:   3'- -UACUGGU------UGGCGCAuGcCCC-GC-CCGU- -5'
19590 3' -60.8 NC_004686.1 + 17247 0.66 0.386866
Target:  5'- uUGGCCGcgcAUCGCGgcuucccacuccgACuGaGGGCGGGCAg -3'
miRNA:   3'- uACUGGU---UGGCGCa------------UG-C-CCCGCCCGU- -5'
19590 3' -60.8 NC_004686.1 + 19185 0.67 0.381668
Target:  5'- gGUGcGCCGGgUGCuggugGUACGGGuGUGGGCGg -3'
miRNA:   3'- -UAC-UGGUUgGCG-----CAUGCCC-CGCCCGU- -5'
19590 3' -60.8 NC_004686.1 + 5626 0.67 0.381668
Target:  5'- gGUGACUucuCCGCGUuccguUGGGGUGuGCAg -3'
miRNA:   3'- -UACUGGuu-GGCGCAu----GCCCCGCcCGU- -5'
19590 3' -60.8 NC_004686.1 + 14820 0.67 0.373109
Target:  5'- --uGCCGguacACCGCGUACGGGuguuccuuGUGGGUc -3'
miRNA:   3'- uacUGGU----UGGCGCAUGCCC--------CGCCCGu -5'
19590 3' -60.8 NC_004686.1 + 17540 0.67 0.37226
Target:  5'- cUGGCgCAGCUGUuuggccaGU-UGGGGCGGGCu -3'
miRNA:   3'- uACUG-GUUGGCG-------CAuGCCCCGCCCGu -5'
19590 3' -60.8 NC_004686.1 + 12109 0.67 0.36468
Target:  5'- -cGGCU-ACCGCGgcuuCGGcugccgcaacGGCGGGCAg -3'
miRNA:   3'- uaCUGGuUGGCGCau--GCC----------CCGCCCGU- -5'
19590 3' -60.8 NC_004686.1 + 53278 0.68 0.324545
Target:  5'- cUGACCGguaacaacuaccGCCGUGUACGGGGUcaccgauucgauGcGGCc -3'
miRNA:   3'- uACUGGU------------UGGCGCAUGCCCCG------------C-CCGu -5'
19590 3' -60.8 NC_004686.1 + 24252 0.68 0.324545
Target:  5'- -gGGCCu-CC-UGUugGGGGUGGGCc -3'
miRNA:   3'- uaCUGGuuGGcGCAugCCCCGCCCGu -5'
19590 3' -60.8 NC_004686.1 + 41949 0.68 0.309437
Target:  5'- -cGGCCAugggacagcGCCG-GUugGGGGaCGGGUu -3'
miRNA:   3'- uaCUGGU---------UGGCgCAugCCCC-GCCCGu -5'
19590 3' -60.8 NC_004686.1 + 50163 0.68 0.294156
Target:  5'- --cACCAccuccacGCCGUGUGgaucaGGGGUGGGCGg -3'
miRNA:   3'- uacUGGU-------UGGCGCAUg----CCCCGCCCGU- -5'
19590 3' -60.8 NC_004686.1 + 22828 0.69 0.280844
Target:  5'- gGUGACCGcgauaGCCGCGgcgcCGGggguuaGGCGGGUg -3'
miRNA:   3'- -UACUGGU-----UGGCGCau--GCC------CCGCCCGu -5'
19590 3' -60.8 NC_004686.1 + 56113 0.7 0.230015
Target:  5'- -cGACgCGGCCGgGUugGCGGGuGCcGGGCGg -3'
miRNA:   3'- uaCUG-GUUGGCgCA--UGCCC-CG-CCCGU- -5'
19590 3' -60.8 NC_004686.1 + 5106 0.76 0.092866
Target:  5'- -cGACCucGCCGCGagGCGGGGCGGuCAg -3'
miRNA:   3'- uaCUGGu-UGGCGCa-UGCCCCGCCcGU- -5'
19590 3' -60.8 NC_004686.1 + 20534 1.06 0.000482
Target:  5'- cAUGACCAACCGCGUACGGGGCGGGCAu -3'
miRNA:   3'- -UACUGGUUGGCGCAUGCCCCGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.