miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19591 5' -54.8 NC_004686.1 + 25625 0.66 0.743096
Target:  5'- -aUCCGUCGUggagcugggaccgaaCACGCUACCG-AGGa- -3'
miRNA:   3'- caAGGUAGCG---------------GUGUGGUGGCaUCCac -5'
19591 5' -54.8 NC_004686.1 + 22163 0.66 0.738887
Target:  5'- --cCCuuuUUGCCGCccugGCCGCCGUucgcGGUGa -3'
miRNA:   3'- caaGGu--AGCGGUG----UGGUGGCAu---CCAC- -5'
19591 5' -54.8 NC_004686.1 + 22376 0.66 0.728289
Target:  5'- gGUUCCGUUGUUGcCGCCGCUGauGGUGu -3'
miRNA:   3'- -CAAGGUAGCGGU-GUGGUGGCauCCAC- -5'
19591 5' -54.8 NC_004686.1 + 16983 0.66 0.706815
Target:  5'- aUUCCucacggGCCugGCCGCCGgcGGg- -3'
miRNA:   3'- cAAGGuag---CGGugUGGUGGCauCCac -5'
19591 5' -54.8 NC_004686.1 + 28052 0.67 0.685045
Target:  5'- -gUCCGUCGgCAUcuCCGCCGUAGa-- -3'
miRNA:   3'- caAGGUAGCgGUGu-GGUGGCAUCcac -5'
19591 5' -54.8 NC_004686.1 + 21909 0.67 0.674078
Target:  5'- --gCCcgCGcCCGCGCCGCCG-AGGc- -3'
miRNA:   3'- caaGGuaGC-GGUGUGGUGGCaUCCac -5'
19591 5' -54.8 NC_004686.1 + 38074 0.67 0.674078
Target:  5'- cGUUCCugcCGCCGCACCAU--UGGGa- -3'
miRNA:   3'- -CAAGGua-GCGGUGUGGUGgcAUCCac -5'
19591 5' -54.8 NC_004686.1 + 33775 0.68 0.629917
Target:  5'- aGUUCCGUCG-UACGCCcacGCCGgcGGg- -3'
miRNA:   3'- -CAAGGUAGCgGUGUGG---UGGCauCCac -5'
19591 5' -54.8 NC_004686.1 + 13579 0.68 0.629917
Target:  5'- -gUCgAUCGUCAaccCGCCAUCGguggGGGUGa -3'
miRNA:   3'- caAGgUAGCGGU---GUGGUGGCa---UCCAC- -5'
19591 5' -54.8 NC_004686.1 + 48976 0.68 0.629917
Target:  5'- aUUCCGUgCGCCgu-CCGCCGUGGcGUa -3'
miRNA:   3'- cAAGGUA-GCGGuguGGUGGCAUC-CAc -5'
19591 5' -54.8 NC_004686.1 + 21969 0.68 0.618855
Target:  5'- --gCCAcCGCCACcgccGCCGCCGUAGcGa- -3'
miRNA:   3'- caaGGUaGCGGUG----UGGUGGCAUC-Cac -5'
19591 5' -54.8 NC_004686.1 + 39846 0.68 0.596778
Target:  5'- --aCCGUCGCCGCGgCGuCCGUguAGGa- -3'
miRNA:   3'- caaGGUAGCGGUGUgGU-GGCA--UCCac -5'
19591 5' -54.8 NC_004686.1 + 21174 1.09 0.001045
Target:  5'- cGUUCCAUCGCCACACCACCGUAGGUGg -3'
miRNA:   3'- -CAAGGUAGCGGUGUGGUGGCAUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.