miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19592 5' -49.4 NC_004686.1 + 21493 1.11 0.003392
Target:  5'- cCCCAAAAUAAUGCGCACGACGCCGAGc -3'
miRNA:   3'- -GGGUUUUAUUACGCGUGCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 2871 0.78 0.389248
Target:  5'- aCCCAuGAUGggGuUGCAgGACGCCGGGg -3'
miRNA:   3'- -GGGUuUUAUuaC-GCGUgCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 28355 0.77 0.457842
Target:  5'- uCCCAc---GAUGaGCACGACGCCGAa -3'
miRNA:   3'- -GGGUuuuaUUACgCGUGCUGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 9311 0.77 0.468164
Target:  5'- uCCCGuuGUuucUGUGCACGGCGCCGc- -3'
miRNA:   3'- -GGGUuuUAuu-ACGCGUGCUGCGGCuc -5'
19592 5' -49.4 NC_004686.1 + 49677 0.74 0.64495
Target:  5'- gCCgCGAGcacgcaGCGCAUGugGCCGAGg -3'
miRNA:   3'- -GG-GUUUuauua-CGCGUGCugCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 30728 0.72 0.712505
Target:  5'- aUCCGAAGUuugagcguugGAUGCGCGCGuucgggggGCGCUGAu -3'
miRNA:   3'- -GGGUUUUA----------UUACGCGUGC--------UGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 14947 0.72 0.712505
Target:  5'- aCCCAAGAUGucaaagGcCGCcuggauCGACGCUGAGa -3'
miRNA:   3'- -GGGUUUUAUua----C-GCGu-----GCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 25289 0.72 0.752815
Target:  5'- uCCCGAAcgugccagugguagGUGAcGUGCugGAaguCGCCGAGa -3'
miRNA:   3'- -GGGUUU--------------UAUUaCGCGugCU---GCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 5258 0.72 0.756014
Target:  5'- gUCCGccAUGGUcUGCAgGACGCCGAGu -3'
miRNA:   3'- -GGGUuuUAUUAcGCGUgCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 22824 0.71 0.787271
Target:  5'- aCCGcGAUA--GC-CGCGGCGCCGGGg -3'
miRNA:   3'- gGGUuUUAUuaCGcGUGCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 13809 0.71 0.797363
Target:  5'- gCCAAGAgcaGAUGCuGCGCGACGaaGAc -3'
miRNA:   3'- gGGUUUUa--UUACG-CGUGCUGCggCUc -5'
19592 5' -49.4 NC_004686.1 + 10988 0.7 0.81698
Target:  5'- gCCCGGAGUuguUGUGgGCGGCguguaccccGCCGGGg -3'
miRNA:   3'- -GGGUUUUAuu-ACGCgUGCUG---------CGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 23307 0.7 0.826483
Target:  5'- aCCCAGAAcAccGUG-ACGACGUCGGGa -3'
miRNA:   3'- -GGGUUUUaUuaCGCgUGCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 38916 0.7 0.844824
Target:  5'- uCCCAgcAGAUcuUGCGgGCGGCGUCGu- -3'
miRNA:   3'- -GGGU--UUUAuuACGCgUGCUGCGGCuc -5'
19592 5' -49.4 NC_004686.1 + 54800 0.7 0.851898
Target:  5'- uCCCGGAaggcgcguugcucGUGAUccacacaGCGUugGGCGCCGuGg -3'
miRNA:   3'- -GGGUUU-------------UAUUA-------CGCGugCUGCGGCuC- -5'
19592 5' -49.4 NC_004686.1 + 14510 0.69 0.870526
Target:  5'- aUCCGGAGccGUG-GCGCGGCGCCa-- -3'
miRNA:   3'- -GGGUUUUauUACgCGUGCUGCGGcuc -5'
19592 5' -49.4 NC_004686.1 + 14096 0.69 0.870526
Target:  5'- gUCCGcgGUGAUGUGCACGuugcguuucuCGCCGc- -3'
miRNA:   3'- -GGGUuuUAUUACGCGUGCu---------GCGGCuc -5'
19592 5' -49.4 NC_004686.1 + 49136 0.69 0.88405
Target:  5'- aUCCGGGAUugcacguggcuguuGAucUGCGCGacgggGACGCCGAGu -3'
miRNA:   3'- -GGGUUUUA--------------UU--ACGCGUg----CUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 22119 0.69 0.886354
Target:  5'- aCCCGAGGUGAaugucgacGCGCcgccguCGGCGCCGu- -3'
miRNA:   3'- -GGGUUUUAUUa-------CGCGu-----GCUGCGGCuc -5'
19592 5' -49.4 NC_004686.1 + 20513 0.69 0.893855
Target:  5'- aCCCGAcGUAuccgcauUGCGCugGGuCGCUGGu -3'
miRNA:   3'- -GGGUUuUAUu------ACGCGugCU-GCGGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.