miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19592 5' -49.4 NC_004686.1 + 2871 0.78 0.389248
Target:  5'- aCCCAuGAUGggGuUGCAgGACGCCGGGg -3'
miRNA:   3'- -GGGUuUUAUuaC-GCGUgCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 36779 0.65 0.971428
Target:  5'- cCCCGGAAauagaacUGAUGaggaGUACG-CGCCGuGg -3'
miRNA:   3'- -GGGUUUU-------AUUACg---CGUGCuGCGGCuC- -5'
19592 5' -49.4 NC_004686.1 + 38548 0.66 0.9685
Target:  5'- gCCAAAAaAGucUGCGCccuccuCGACGCUGGa -3'
miRNA:   3'- gGGUUUUaUU--ACGCGu-----GCUGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 6146 0.66 0.968162
Target:  5'- uCCUGAucggcgcGGUGAUGCGCugGucgcaaGCCGGa -3'
miRNA:   3'- -GGGUU-------UUAUUACGCGugCug----CGGCUc -5'
19592 5' -49.4 NC_004686.1 + 52432 0.66 0.965003
Target:  5'- aCCAuuGAAUGGUGCGgGCGAaaUGgCGAa -3'
miRNA:   3'- gGGU--UUUAUUACGCgUGCU--GCgGCUc -5'
19592 5' -49.4 NC_004686.1 + 5772 0.67 0.938264
Target:  5'- gUCGAcc-GAUGCGUucgcugugguccGCGACGCCGAc -3'
miRNA:   3'- gGGUUuuaUUACGCG------------UGCUGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 52895 0.67 0.938264
Target:  5'- gCCAGGAUcauGcgGCGCAUGGCucGCCGc- -3'
miRNA:   3'- gGGUUUUA---UuaCGCGUGCUG--CGGCuc -5'
19592 5' -49.4 NC_004686.1 + 12595 0.68 0.920992
Target:  5'- aCCAGGGUGGcGUGCugGAa-CCGGGa -3'
miRNA:   3'- gGGUUUUAUUaCGCGugCUgcGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 19397 0.68 0.901074
Target:  5'- gCCCAGuGGUGGUG-GUAUcGCGCCGGGu -3'
miRNA:   3'- -GGGUU-UUAUUACgCGUGcUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 20513 0.69 0.893855
Target:  5'- aCCCGAcGUAuccgcauUGCGCugGGuCGCUGGu -3'
miRNA:   3'- -GGGUUuUAUu------ACGCGugCU-GCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 49677 0.74 0.64495
Target:  5'- gCCgCGAGcacgcaGCGCAUGugGCCGAGg -3'
miRNA:   3'- -GG-GUUUuauua-CGCGUGCugCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 25289 0.72 0.752815
Target:  5'- uCCCGAAcgugccagugguagGUGAcGUGCugGAaguCGCCGAGa -3'
miRNA:   3'- -GGGUUU--------------UAUUaCGCGugCU---GCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 13809 0.71 0.797363
Target:  5'- gCCAAGAgcaGAUGCuGCGCGACGaaGAc -3'
miRNA:   3'- gGGUUUUa--UUACG-CGUGCUGCggCUc -5'
19592 5' -49.4 NC_004686.1 + 23307 0.7 0.826483
Target:  5'- aCCCAGAAcAccGUG-ACGACGUCGGGa -3'
miRNA:   3'- -GGGUUUUaUuaCGCgUGCUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 14510 0.69 0.870526
Target:  5'- aUCCGGAGccGUG-GCGCGGCGCCa-- -3'
miRNA:   3'- -GGGUUUUauUACgCGUGCUGCGGcuc -5'
19592 5' -49.4 NC_004686.1 + 49136 0.69 0.88405
Target:  5'- aUCCGGGAUugcacguggcuguuGAucUGCGCGacgggGACGCCGAGu -3'
miRNA:   3'- -GGGUUUUA--------------UU--ACGCGUg----CUGCGGCUC- -5'
19592 5' -49.4 NC_004686.1 + 38495 0.66 0.9685
Target:  5'- gUCCGGggccGAUGAUGCcCGCGGCGauGAGc -3'
miRNA:   3'- -GGGUU----UUAUUACGcGUGCUGCggCUC- -5'
19592 5' -49.4 NC_004686.1 + 28355 0.77 0.457842
Target:  5'- uCCCAc---GAUGaGCACGACGCCGAa -3'
miRNA:   3'- -GGGUuuuaUUACgCGUGCUGCGGCUc -5'
19592 5' -49.4 NC_004686.1 + 9311 0.77 0.468164
Target:  5'- uCCCGuuGUuucUGUGCACGGCGCCGc- -3'
miRNA:   3'- -GGGUuuUAuu-ACGCGUGCUGCGGCuc -5'
19592 5' -49.4 NC_004686.1 + 30728 0.72 0.712505
Target:  5'- aUCCGAAGUuugagcguugGAUGCGCGCGuucgggggGCGCUGAu -3'
miRNA:   3'- -GGGUUUUA----------UUACGCGUGC--------UGCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.