miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19621 5' -57.4 NC_004686.1 + 30029 0.66 0.625845
Target:  5'- gUCgGugUGGCGgCGGCuuGCCgAUCa- -3'
miRNA:   3'- -AGaCugACCGCaGCCGugCGG-UAGcu -5'
19621 5' -57.4 NC_004686.1 + 35066 0.66 0.625845
Target:  5'- --aGGCUGGCGUCuGguCGCUgauGUUGAu -3'
miRNA:   3'- agaCUGACCGCAGcCguGCGG---UAGCU- -5'
19621 5' -57.4 NC_004686.1 + 19620 0.66 0.615035
Target:  5'- uUCcGGC-GGCGUCGGCgGCGUCGUa-- -3'
miRNA:   3'- -AGaCUGaCCGCAGCCG-UGCGGUAgcu -5'
19621 5' -57.4 NC_004686.1 + 5914 0.66 0.604239
Target:  5'- gUCUGGCcGGUGgcuaUCGGC-UGCCggCGAa -3'
miRNA:   3'- -AGACUGaCCGC----AGCCGuGCGGuaGCU- -5'
19621 5' -57.4 NC_004686.1 + 52770 0.66 0.593467
Target:  5'- cCUGGCUGGUGgagCGGggaACGCgAUCc- -3'
miRNA:   3'- aGACUGACCGCa--GCCg--UGCGgUAGcu -5'
19621 5' -57.4 NC_004686.1 + 52182 0.66 0.593467
Target:  5'- --aGGgUGGUGUCuugGGgGCGCCAUUGGc -3'
miRNA:   3'- agaCUgACCGCAG---CCgUGCGGUAGCU- -5'
19621 5' -57.4 NC_004686.1 + 45876 0.66 0.579511
Target:  5'- --aGGCgUGGUGUCGGCggaugaaguguuggGCGUCGUUGGu -3'
miRNA:   3'- agaCUG-ACCGCAGCCG--------------UGCGGUAGCU- -5'
19621 5' -57.4 NC_004686.1 + 478 0.67 0.550771
Target:  5'- gUUGACcgcccGGCGUCGGCguaacGCGCCAa--- -3'
miRNA:   3'- aGACUGa----CCGCAGCCG-----UGCGGUagcu -5'
19621 5' -57.4 NC_004686.1 + 25814 0.67 0.540234
Target:  5'- aCUGGCUGuGCGcCGGCcCGCgGcCGGg -3'
miRNA:   3'- aGACUGAC-CGCaGCCGuGCGgUaGCU- -5'
19621 5' -57.4 NC_004686.1 + 30372 0.67 0.540234
Target:  5'- cCU-ACUGGCGagaucCGGUuccaucGCGCCAUCGGu -3'
miRNA:   3'- aGAcUGACCGCa----GCCG------UGCGGUAGCU- -5'
19621 5' -57.4 NC_004686.1 + 12243 0.67 0.539184
Target:  5'- -aUGGCcGGCaUCGGCACGgacgcacUCAUCGAa -3'
miRNA:   3'- agACUGaCCGcAGCCGUGC-------GGUAGCU- -5'
19621 5' -57.4 NC_004686.1 + 13876 0.67 0.539184
Target:  5'- aUCUGcucUUGGCGUuucugcgcgagcgUGGCACGCCAgaUCGc -3'
miRNA:   3'- -AGACu--GACCGCA-------------GCCGUGCGGU--AGCu -5'
19621 5' -57.4 NC_004686.1 + 18919 0.67 0.519373
Target:  5'- gUCcgGAUUGGCGgucucgUCGcGCAccgcCGCCGUCGAc -3'
miRNA:   3'- -AGa-CUGACCGC------AGC-CGU----GCGGUAGCU- -5'
19621 5' -57.4 NC_004686.1 + 10210 0.68 0.488705
Target:  5'- --aGGC-GGCGUCaaGGUucugaaccGCGCCAUCGAa -3'
miRNA:   3'- agaCUGaCCGCAG--CCG--------UGCGGUAGCU- -5'
19621 5' -57.4 NC_004686.1 + 23203 0.68 0.478671
Target:  5'- gUUGgucACUGGCGUUaauguggugGGCACGCCggUGAa -3'
miRNA:   3'- aGAC---UGACCGCAG---------CCGUGCGGuaGCU- -5'
19621 5' -57.4 NC_004686.1 + 29118 0.69 0.439599
Target:  5'- gUCggGAUcGGCGUCGGCGgGCCG-CGc -3'
miRNA:   3'- -AGa-CUGaCCGCAGCCGUgCGGUaGCu -5'
19621 5' -57.4 NC_004686.1 + 37729 0.69 0.439599
Target:  5'- --gGACcggGGCGUCGuGgaGCGCCAUUGAa -3'
miRNA:   3'- agaCUGa--CCGCAGC-Cg-UGCGGUAGCU- -5'
19621 5' -57.4 NC_004686.1 + 55255 0.69 0.430117
Target:  5'- aUUUGGugGGCGUCGGCGgcUGCCGguUCGAg -3'
miRNA:   3'- -AGACUgaCCGCAGCCGU--GCGGU--AGCU- -5'
19621 5' -57.4 NC_004686.1 + 53312 0.69 0.430117
Target:  5'- cCUG-CUGGUGUCGGUGCuGCUGUgCGGu -3'
miRNA:   3'- aGACuGACCGCAGCCGUG-CGGUA-GCU- -5'
19621 5' -57.4 NC_004686.1 + 25957 0.71 0.318666
Target:  5'- aCUGuuUGGCGcUCGGUgACGCCAUUGu -3'
miRNA:   3'- aGACugACCGC-AGCCG-UGCGGUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.