miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19625 3' -57.5 NC_004686.1 + 23213 0.66 0.62394
Target:  5'- gUCGuca--GGCGCgGGaGGUGCGGCa -3'
miRNA:   3'- aAGCucaagCUGCGgCUaCCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 33456 0.66 0.613125
Target:  5'- -gCGAuagccgCGGCGCCGggGGUuaGGCg -3'
miRNA:   3'- aaGCUcaa---GCUGCGGCuaCCGcgCCG- -5'
19625 3' -57.5 NC_004686.1 + 1681 0.66 0.613125
Target:  5'- -aCGAGgguugCGuuGUCGAcuUGGgGCGGCu -3'
miRNA:   3'- aaGCUCaa---GCugCGGCU--ACCgCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 33717 0.66 0.613125
Target:  5'- -aCG-GUcaUCGcCGCCGG-GGCGgGGCu -3'
miRNA:   3'- aaGCuCA--AGCuGCGGCUaCCGCgCCG- -5'
19625 3' -57.5 NC_004686.1 + 50611 0.66 0.602325
Target:  5'- ----cGUUCGG-GuuGGUGGUGCGGUa -3'
miRNA:   3'- aagcuCAAGCUgCggCUACCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 18111 0.66 0.602325
Target:  5'- gUCG-GUUCGuucuC-CCaAUGGUGCGGCg -3'
miRNA:   3'- aAGCuCAAGCu---GcGGcUACCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 40952 0.66 0.570106
Target:  5'- uUUC-AGUUCGAUcUUGcgGGCGCGGUc -3'
miRNA:   3'- -AAGcUCAAGCUGcGGCuaCCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 8841 0.66 0.569039
Target:  5'- ---cAGUUCGAucugcucagcccaCGCCucgacGGUGGCGCGGUu -3'
miRNA:   3'- aagcUCAAGCU-------------GCGG-----CUACCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 28715 0.66 0.569039
Target:  5'- aUCGGGcgggUCGAuugcccaCGCacaGAuagcguccuUGGCGCGGCg -3'
miRNA:   3'- aAGCUCa---AGCU-------GCGg--CU---------ACCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 21165 0.67 0.559454
Target:  5'- -gCGuuGUUCcGCGCCGcgGGgGCuGGCa -3'
miRNA:   3'- aaGCu-CAAGcUGCGGCuaCCgCG-CCG- -5'
19625 3' -57.5 NC_004686.1 + 24404 0.67 0.548859
Target:  5'- -gCGGGgaugguuauccggUGACGCCGAcugacgauagucgGGCGUGGCg -3'
miRNA:   3'- aaGCUCaa-----------GCUGCGGCUa------------CCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 19131 0.67 0.548859
Target:  5'- aUCGAGggugaacauUUCGACGCCGAUgaGGaCGUGa- -3'
miRNA:   3'- aAGCUC---------AAGCUGCGGCUA--CC-GCGCcg -5'
19625 3' -57.5 NC_004686.1 + 47302 0.67 0.527864
Target:  5'- -gCGAGgaggUCGGCGCgGAUGGCcccccCGuGCu -3'
miRNA:   3'- aaGCUCa---AGCUGCGgCUACCGc----GC-CG- -5'
19625 3' -57.5 NC_004686.1 + 29118 0.67 0.517478
Target:  5'- gUCGGGaUCGGCGUCGGcgGGcCGCGcuuGCg -3'
miRNA:   3'- aAGCUCaAGCUGCGGCUa-CC-GCGC---CG- -5'
19625 3' -57.5 NC_004686.1 + 14507 0.67 0.517478
Target:  5'- -gCGAuc-CGGaGCCG-UGGCGCGGCg -3'
miRNA:   3'- aaGCUcaaGCUgCGGCuACCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 1213 0.67 0.517478
Target:  5'- gUCG-GUUUG-UG-CGGUGGCGCGGUu -3'
miRNA:   3'- aAGCuCAAGCuGCgGCUACCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 24489 0.68 0.507175
Target:  5'- --gGGGUcgUUGACGuuGcauucGGCGCGGCa -3'
miRNA:   3'- aagCUCA--AGCUGCggCua---CCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 40119 0.68 0.49696
Target:  5'- -cCGAGcgUGaACGCCGAccacUGGUGCaGGCu -3'
miRNA:   3'- aaGCUCaaGC-UGCGGCU----ACCGCG-CCG- -5'
19625 3' -57.5 NC_004686.1 + 40722 0.68 0.486839
Target:  5'- -gCGAGggaCGACGCgaaaGccGGUGCGGCu -3'
miRNA:   3'- aaGCUCaa-GCUGCGg---CuaCCGCGCCG- -5'
19625 3' -57.5 NC_004686.1 + 10120 0.68 0.465911
Target:  5'- gUUCGAuggcgcgGUUCagaaccuuGACGCCGccuUGGgGCGGCu -3'
miRNA:   3'- -AAGCU-------CAAG--------CUGCGGCu--ACCgCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.