miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19625 5' -56.8 NC_004686.1 + 31905 0.66 0.642621
Target:  5'- aUGCCGUGGCCGGuuccgugguUGUCGcacauCCGGGu -3'
miRNA:   3'- cACGGCGCUGGUU---------GCAGCuu---GGCCUu -5'
19625 5' -56.8 NC_004686.1 + 49891 0.66 0.6317
Target:  5'- -gGCCGCGGCgAACGaucaUCGAgaucACCGcGAu -3'
miRNA:   3'- caCGGCGCUGgUUGC----AGCU----UGGC-CUu -5'
19625 5' -56.8 NC_004686.1 + 39474 0.66 0.620778
Target:  5'- --uCCGCGGCCAGgGUUGGACuCGuGAGc -3'
miRNA:   3'- cacGGCGCUGGUUgCAGCUUG-GC-CUU- -5'
19625 5' -56.8 NC_004686.1 + 12164 0.66 0.619687
Target:  5'- -gGCCGCGggGCCAGCGgcggcguUCGcAAUCGGGu -3'
miRNA:   3'- caCGGCGC--UGGUUGC-------AGC-UUGGCCUu -5'
19625 5' -56.8 NC_004686.1 + 22752 0.66 0.609867
Target:  5'- -cGCCGCGGCUAuCG-CGGucACCGGu- -3'
miRNA:   3'- caCGGCGCUGGUuGCaGCU--UGGCCuu -5'
19625 5' -56.8 NC_004686.1 + 34013 0.66 0.609867
Target:  5'- -cGCCGUuGCCGcCGUUGccGCCGGAAa -3'
miRNA:   3'- caCGGCGcUGGUuGCAGCu-UGGCCUU- -5'
19625 5' -56.8 NC_004686.1 + 31047 0.67 0.58811
Target:  5'- -gGCCGCGACCAcagcACGcCGAAUCu--- -3'
miRNA:   3'- caCGGCGCUGGU----UGCaGCUUGGccuu -5'
19625 5' -56.8 NC_004686.1 + 33839 0.67 0.577281
Target:  5'- -gGCUGCGACggCGAC-UUGGGCCGGGGu -3'
miRNA:   3'- caCGGCGCUG--GUUGcAGCUUGGCCUU- -5'
19625 5' -56.8 NC_004686.1 + 45165 0.67 0.577281
Target:  5'- -gGCCGgGGCCAcCGaUCGGACCGc-- -3'
miRNA:   3'- caCGGCgCUGGUuGC-AGCUUGGCcuu -5'
19625 5' -56.8 NC_004686.1 + 3455 0.67 0.555766
Target:  5'- gGUGCCGUggcuugcggaGACCGAgGUCGGuUUGGAAc -3'
miRNA:   3'- -CACGGCG----------CUGGUUgCAGCUuGGCCUU- -5'
19625 5' -56.8 NC_004686.1 + 18984 0.68 0.52396
Target:  5'- -cGCCGgGACCAAUGUCacccACCGaGAc -3'
miRNA:   3'- caCGGCgCUGGUUGCAGcu--UGGC-CUu -5'
19625 5' -56.8 NC_004686.1 + 49616 0.68 0.51351
Target:  5'- -gGCUGCGACUGGCGccccucguuugaUCGAACCuGGGc -3'
miRNA:   3'- caCGGCGCUGGUUGC------------AGCUUGG-CCUu -5'
19625 5' -56.8 NC_004686.1 + 55149 0.68 0.502114
Target:  5'- -cGCCGUGcgggaacACCGAC-UCGAACCGGc- -3'
miRNA:   3'- caCGGCGC-------UGGUUGcAGCUUGGCCuu -5'
19625 5' -56.8 NC_004686.1 + 29654 0.68 0.4827
Target:  5'- -cGCCGCGgaACCAcgacAUGUCGAGguuccCCGGAu -3'
miRNA:   3'- caCGGCGC--UGGU----UGCAGCUU-----GGCCUu -5'
19625 5' -56.8 NC_004686.1 + 45617 0.69 0.472627
Target:  5'- -cGCCGaacugGACCGACGUCGAcucuucGCCcucGGAAa -3'
miRNA:   3'- caCGGCg----CUGGUUGCAGCU------UGG---CCUU- -5'
19625 5' -56.8 NC_004686.1 + 21190 0.69 0.440173
Target:  5'- gGUGUCgacgGCGACCGACacccuuucgucagaGUCGAGCUGGGc -3'
miRNA:   3'- -CACGG----CGCUGGUUG--------------CAGCUUGGCCUu -5'
19625 5' -56.8 NC_004686.1 + 49706 0.7 0.387253
Target:  5'- -cGUCGCGACCGuaguCGUCcucACCGGAu -3'
miRNA:   3'- caCGGCGCUGGUu---GCAGcu-UGGCCUu -5'
19625 5' -56.8 NC_004686.1 + 5565 0.71 0.361133
Target:  5'- -gGCUGUGACC-GCGUCG-ACCGGu- -3'
miRNA:   3'- caCGGCGCUGGuUGCAGCuUGGCCuu -5'
19625 5' -56.8 NC_004686.1 + 23819 0.71 0.328259
Target:  5'- -gGCCGCGGCgAGCGgaGAGCCGaGAAg -3'
miRNA:   3'- caCGGCGCUGgUUGCagCUUGGC-CUU- -5'
19625 5' -56.8 NC_004686.1 + 6322 0.71 0.328259
Target:  5'- -cGCCGCGGCCuuCGUC--GCCGGc- -3'
miRNA:   3'- caCGGCGCUGGuuGCAGcuUGGCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.