Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19658 | 5' | -56.7 | NC_004686.1 | + | 707 | 0.67 | 0.616298 |
Target: 5'- cGCCGCuugucGAUAUUGCCCgCCAguguuuuauccCCGAUGa -3' miRNA: 3'- aCGGCG-----UUGUAGUGGG-GGU-----------GGCUACc -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 798 | 0.66 | 0.659683 |
Target: 5'- uUGuCCGCGGCgGUCAggugugcgccuCCUCCACCGGacaggUGGu -3' miRNA: 3'- -AC-GGCGUUG-UAGU-----------GGGGGUGGCU-----ACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 2998 | 0.74 | 0.230127 |
Target: 5'- cUGCCGguGuggcuuguCAUCGCCCUgACUGGUGGa -3' miRNA: 3'- -ACGGCguU--------GUAGUGGGGgUGGCUACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 4687 | 0.75 | 0.218502 |
Target: 5'- cGCCGCGAUccaCGCCCCCACaCGAg-- -3' miRNA: 3'- aCGGCGUUGua-GUGGGGGUG-GCUacc -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 6006 | 0.67 | 0.561359 |
Target: 5'- aGCCGCAgaccugcccgaugACAUCGCCgCgAaugCGAUGGc -3' miRNA: 3'- aCGGCGU-------------UGUAGUGGgGgUg--GCUACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 6832 | 0.68 | 0.541204 |
Target: 5'- aGgCGCAACG-CGuuUCUCCACCGAUGa -3' miRNA: 3'- aCgGCGUUGUaGU--GGGGGUGGCUACc -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 8266 | 0.67 | 0.583866 |
Target: 5'- aGUCGUAACAaCAgUCCUGcCCGGUGGu -3' miRNA: 3'- aCGGCGUUGUaGUgGGGGU-GGCUACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 8372 | 0.68 | 0.520256 |
Target: 5'- cGCCGCucauGACAUcCGCCCCCGCg----- -3' miRNA: 3'- aCGGCG----UUGUA-GUGGGGGUGgcuacc -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 8969 | 0.68 | 0.551784 |
Target: 5'- cGuCCGCGACcugacgccUgGCUCCCACCGAacgGGg -3' miRNA: 3'- aC-GGCGUUGu-------AgUGGGGGUGGCUa--CC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 12699 | 0.71 | 0.388435 |
Target: 5'- gGCCGCAAUG-CACCCCUugUGGgcacguugcaggcacUGGa -3' miRNA: 3'- aCGGCGUUGUaGUGGGGGugGCU---------------ACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 13482 | 1.1 | 0.000716 |
Target: 5'- gUGCCGCAACAUCACCCCCACCGAUGGc -3' miRNA: 3'- -ACGGCGUUGUAGUGGGGGUGGCUACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 13691 | 0.72 | 0.334436 |
Target: 5'- aGCCGCGGCGcUGgUCCCGCCcGUGGg -3' miRNA: 3'- aCGGCGUUGUaGUgGGGGUGGcUACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 14866 | 0.68 | 0.519217 |
Target: 5'- aGCgGCGAgGUCucgggcuuCCUCCACCGAaucgagaUGGg -3' miRNA: 3'- aCGgCGUUgUAGu-------GGGGGUGGCU-------ACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 16522 | 0.71 | 0.342501 |
Target: 5'- cGCCGCGgcugaugccguGCcgCACCCUCACCcGUGa -3' miRNA: 3'- aCGGCGU-----------UGuaGUGGGGGUGGcUACc -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 22485 | 0.71 | 0.350705 |
Target: 5'- cGCCccgGCGGCgAUgACCgUCACCGGUGGg -3' miRNA: 3'- aCGG---CGUUG-UAgUGGgGGUGGCUACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 22557 | 0.71 | 0.350705 |
Target: 5'- cGCCGCAGCcgcccUCACCaUCACCGgcGGc -3' miRNA: 3'- aCGGCGUUGu----AGUGGgGGUGGCuaCC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 22594 | 0.79 | 0.111225 |
Target: 5'- uUGUCGgGACcggugGUCACCCCCACCGccGGg -3' miRNA: 3'- -ACGGCgUUG-----UAGUGGGGGUGGCuaCC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 22752 | 0.77 | 0.154649 |
Target: 5'- cGCCGCGGCuAUCGCggUCACCGGUGGu -3' miRNA: 3'- aCGGCGUUG-UAGUGggGGUGGCUACC- -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 23769 | 0.71 | 0.350705 |
Target: 5'- aGCgGCAACgugcuugcuuauGUCcuucucgacgcaACCCCCGCCGAUGu -3' miRNA: 3'- aCGgCGUUG------------UAG------------UGGGGGUGGCUACc -5' |
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19658 | 5' | -56.7 | NC_004686.1 | + | 24796 | 0.65 | 0.678037 |
Target: 5'- aGCCGgGgcucucggaaccggACuccucggagggAUCGCCCUCACCGGUGu -3' miRNA: 3'- aCGGCgU--------------UG-----------UAGUGGGGGUGGCUACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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