miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19658 5' -56.7 NC_004686.1 + 6006 0.67 0.561359
Target:  5'- aGCCGCAgaccugcccgaugACAUCGCCgCgAaugCGAUGGc -3'
miRNA:   3'- aCGGCGU-------------UGUAGUGGgGgUg--GCUACC- -5'
19658 5' -56.7 NC_004686.1 + 12699 0.71 0.388435
Target:  5'- gGCCGCAAUG-CACCCCUugUGGgcacguugcaggcacUGGa -3'
miRNA:   3'- aCGGCGUUGUaGUGGGGGugGCU---------------ACC- -5'
19658 5' -56.7 NC_004686.1 + 34567 0.69 0.447848
Target:  5'- gGCCGCAuaagaaaaGCCCCCACCuGUGu -3'
miRNA:   3'- aCGGCGUuguag---UGGGGGUGGcUACc -5'
19658 5' -56.7 NC_004686.1 + 49616 0.69 0.479382
Target:  5'- gGCUGCGACuggCGCCCCUcguuugAUCGAaccUGGg -3'
miRNA:   3'- aCGGCGUUGua-GUGGGGG------UGGCU---ACC- -5'
19658 5' -56.7 NC_004686.1 + 54072 0.68 0.509901
Target:  5'- cGCCGCGACAUCGCgUuggcgUUGCCGuucGUGGa -3'
miRNA:   3'- aCGGCGUUGUAGUGgG-----GGUGGC---UACC- -5'
19658 5' -56.7 NC_004686.1 + 49891 0.68 0.527553
Target:  5'- gGCCGCGGCGaacgaucaucgagaUCACCgCgAUCGGUGa -3'
miRNA:   3'- aCGGCGUUGU--------------AGUGGgGgUGGCUACc -5'
19658 5' -56.7 NC_004686.1 + 6832 0.68 0.541204
Target:  5'- aGgCGCAACG-CGuuUCUCCACCGAUGa -3'
miRNA:   3'- aCgGCGUUGUaGU--GGGGGUGGCUACc -5'
19658 5' -56.7 NC_004686.1 + 8969 0.68 0.551784
Target:  5'- cGuCCGCGACcugacgccUgGCUCCCACCGAacgGGg -3'
miRNA:   3'- aC-GGCGUUGu-------AgUGGGGGUGGCUa--CC- -5'
19658 5' -56.7 NC_004686.1 + 44828 0.68 0.551784
Target:  5'- -uCUGgGACGUgGCCCCauuacaucguCACCGGUGGa -3'
miRNA:   3'- acGGCgUUGUAgUGGGG----------GUGGCUACC- -5'
19658 5' -56.7 NC_004686.1 + 51988 0.71 0.359047
Target:  5'- -uCCGCGACAUCgacACCCUgACCGcgcaGUGGg -3'
miRNA:   3'- acGGCGUUGUAG---UGGGGgUGGC----UACC- -5'
19658 5' -56.7 NC_004686.1 + 22557 0.71 0.350705
Target:  5'- cGCCGCAGCcgcccUCACCaUCACCGgcGGc -3'
miRNA:   3'- aCGGCGUUGu----AGUGGgGGUGGCuaCC- -5'
19658 5' -56.7 NC_004686.1 + 22485 0.71 0.350705
Target:  5'- cGCCccgGCGGCgAUgACCgUCACCGGUGGg -3'
miRNA:   3'- aCGG---CGUUG-UAgUGGgGGUGGCUACC- -5'
19658 5' -56.7 NC_004686.1 + 22594 0.79 0.111225
Target:  5'- uUGUCGgGACcggugGUCACCCCCACCGccGGg -3'
miRNA:   3'- -ACGGCgUUG-----UAGUGGGGGUGGCuaCC- -5'
19658 5' -56.7 NC_004686.1 + 31736 0.79 0.117572
Target:  5'- aGCCGCGACA--AUCCCCACCGAa-- -3'
miRNA:   3'- aCGGCGUUGUagUGGGGGUGGCUacc -5'
19658 5' -56.7 NC_004686.1 + 22752 0.77 0.154649
Target:  5'- cGCCGCGGCuAUCGCggUCACCGGUGGu -3'
miRNA:   3'- aCGGCGUUG-UAGUGggGGUGGCUACC- -5'
19658 5' -56.7 NC_004686.1 + 50570 0.76 0.191624
Target:  5'- gGCCGCAAgAUCGuguCCCCUGCCGAUc- -3'
miRNA:   3'- aCGGCGUUgUAGU---GGGGGUGGCUAcc -5'
19658 5' -56.7 NC_004686.1 + 56048 0.73 0.295486
Target:  5'- gGCCGCGucgccugGCGguucggCACCCgCgACCGGUGGa -3'
miRNA:   3'- aCGGCGU-------UGUa-----GUGGG-GgUGGCUACC- -5'
19658 5' -56.7 NC_004686.1 + 55224 0.72 0.326512
Target:  5'- cGCCGuCAACAUCGuCUCCCGCCa---- -3'
miRNA:   3'- aCGGC-GUUGUAGU-GGGGGUGGcuacc -5'
19658 5' -56.7 NC_004686.1 + 13691 0.72 0.334436
Target:  5'- aGCCGCGGCGcUGgUCCCGCCcGUGGg -3'
miRNA:   3'- aCGGCGUUGUaGUgGGGGUGGcUACC- -5'
19658 5' -56.7 NC_004686.1 + 23769 0.71 0.350705
Target:  5'- aGCgGCAACgugcuugcuuauGUCcuucucgacgcaACCCCCGCCGAUGu -3'
miRNA:   3'- aCGgCGUUG------------UAG------------UGGGGGUGGCUACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.