miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19668 5' -57.5 NC_004686.1 + 17234 0.66 0.583448
Target:  5'- gGCCGGCuucACCGGUGccagcucgccacGCUugAugCGCu- -3'
miRNA:   3'- -UGGCCG---UGGCUAC------------CGAugUugGCGua -5'
19668 5' -57.5 NC_004686.1 + 25179 0.66 0.583448
Target:  5'- aACCGcCGUCGA-GGCUgccGCAACCGCAg -3'
miRNA:   3'- -UGGCcGUGGCUaCCGA---UGUUGGCGUa -5'
19668 5' -57.5 NC_004686.1 + 43850 0.66 0.582359
Target:  5'- cACCGGUcgucgugGCCGccGGC-AUAGCCGCc- -3'
miRNA:   3'- -UGGCCG-------UGGCuaCCGaUGUUGGCGua -5'
19668 5' -57.5 NC_004686.1 + 31870 0.66 0.572577
Target:  5'- cGCCGcUGCCGGUGGC-GCAugCGUg- -3'
miRNA:   3'- -UGGCcGUGGCUACCGaUGUugGCGua -5'
19668 5' -57.5 NC_004686.1 + 34723 0.66 0.561754
Target:  5'- -gCGGCAgaaguUCGccGGCUacgGCAACCGCAa -3'
miRNA:   3'- ugGCCGU-----GGCuaCCGA---UGUUGGCGUa -5'
19668 5' -57.5 NC_004686.1 + 41523 0.66 0.561754
Target:  5'- cAUCGGaCACguguCGAUGGCgaaaGGCCGCAa -3'
miRNA:   3'- -UGGCC-GUG----GCUACCGaug-UUGGCGUa -5'
19668 5' -57.5 NC_004686.1 + 33500 0.66 0.547769
Target:  5'- cACCGGCuguccgcccgauacACCGAUGaacGCUGCcGCCGguUc -3'
miRNA:   3'- -UGGCCG--------------UGGCUAC---CGAUGuUGGCguA- -5'
19668 5' -57.5 NC_004686.1 + 12448 0.66 0.540285
Target:  5'- uUCGaCGCCGAUGGCgcgGCGGCC-CAg -3'
miRNA:   3'- uGGCcGUGGCUACCGa--UGUUGGcGUa -5'
19668 5' -57.5 NC_004686.1 + 42516 0.66 0.540285
Target:  5'- gACCaGCGCCGc-GGCUGaauCAACUGCAc -3'
miRNA:   3'- -UGGcCGUGGCuaCCGAU---GUUGGCGUa -5'
19668 5' -57.5 NC_004686.1 + 421 0.66 0.538153
Target:  5'- aACCGGCggguccgagaggauaGCCGAUGGCUgaguacaccACGuugaaugaggcgaugGCCGCu- -3'
miRNA:   3'- -UGGCCG---------------UGGCUACCGA---------UGU---------------UGGCGua -5'
19668 5' -57.5 NC_004686.1 + 23048 0.66 0.529653
Target:  5'- -gUGGCGuuGGUGGCUAgcccCGGCgGCAUa -3'
miRNA:   3'- ugGCCGUggCUACCGAU----GUUGgCGUA- -5'
19668 5' -57.5 NC_004686.1 + 10661 0.67 0.477782
Target:  5'- uCUGGCugCuAUcaGGCUgcGCAACCGCAUg -3'
miRNA:   3'- uGGCCGugGcUA--CCGA--UGUUGGCGUA- -5'
19668 5' -57.5 NC_004686.1 + 10753 0.67 0.477782
Target:  5'- uGCCGGCACCcccgcGGCgcaAGCCGCc- -3'
miRNA:   3'- -UGGCCGUGGcua--CCGaugUUGGCGua -5'
19668 5' -57.5 NC_004686.1 + 51662 0.67 0.477782
Target:  5'- gUCGGUGCCGccgcagcggaAUGGCUugAacACCGCGa -3'
miRNA:   3'- uGGCCGUGGC----------UACCGAugU--UGGCGUa -5'
19668 5' -57.5 NC_004686.1 + 44062 0.67 0.477782
Target:  5'- cGCCGGCGCCGAaacUGcccgccGUUGCGgcagccgaaGCCGCGg -3'
miRNA:   3'- -UGGCCGUGGCU---AC------CGAUGU---------UGGCGUa -5'
19668 5' -57.5 NC_004686.1 + 6177 0.68 0.467705
Target:  5'- aGCCGGauCCGGUGcuCUGCAAUCGCAa -3'
miRNA:   3'- -UGGCCguGGCUACc-GAUGUUGGCGUa -5'
19668 5' -57.5 NC_004686.1 + 9572 0.68 0.464703
Target:  5'- gGCCGGUAUUGGUGuugcugcugcagguGCUACuGCCGCu- -3'
miRNA:   3'- -UGGCCGUGGCUAC--------------CGAUGuUGGCGua -5'
19668 5' -57.5 NC_004686.1 + 43663 0.68 0.457738
Target:  5'- uCCGGgguCACCGGcUGGCUgGCAGCCuGCGg -3'
miRNA:   3'- uGGCC---GUGGCU-ACCGA-UGUUGG-CGUa -5'
19668 5' -57.5 NC_004686.1 + 36684 0.68 0.447886
Target:  5'- aACCGGCuCCGGgguaGGC-GCAuccACCGCAc -3'
miRNA:   3'- -UGGCCGuGGCUa---CCGaUGU---UGGCGUa -5'
19668 5' -57.5 NC_004686.1 + 39804 0.68 0.435257
Target:  5'- aACCGcguuGCGCCGcaaguuccccggucGUGGCUGgGACCGCc- -3'
miRNA:   3'- -UGGC----CGUGGC--------------UACCGAUgUUGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.