miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19672 5' -66.7 NC_004686.1 + 4138 0.66 0.210907
Target:  5'- aAGCGUUGcCGGUGGa-GCCGUacaaGCCAUc -3'
miRNA:   3'- -UCGCGAC-GCCGCCgcCGGCGg---UGGUA- -5'
19672 5' -66.7 NC_004686.1 + 22027 0.66 0.210907
Target:  5'- cGGCGCcGaCGGCGGCGcGUCGacauuCACCu- -3'
miRNA:   3'- -UCGCGaC-GCCGCCGC-CGGCg----GUGGua -5'
19672 5' -66.7 NC_004686.1 + 12097 0.66 0.20569
Target:  5'- cGGCuucuGCUGCGGCuaccGCGGCUucgGCUGCCGc -3'
miRNA:   3'- -UCG----CGACGCCGc---CGCCGG---CGGUGGUa -5'
19672 5' -66.7 NC_004686.1 + 2976 0.66 0.200584
Target:  5'- cGGUGCUGCuGuGCGGUuuuGGCUGCCGgUGUg -3'
miRNA:   3'- -UCGCGACG-C-CGCCG---CCGGCGGUgGUA- -5'
19672 5' -66.7 NC_004686.1 + 9096 0.66 0.19559
Target:  5'- gAGCGaacuggcaacGCGGCGGCGGUaagggaacaCGCC-CCAa -3'
miRNA:   3'- -UCGCga--------CGCCGCCGCCG---------GCGGuGGUa -5'
19672 5' -66.7 NC_004686.1 + 21887 0.67 0.176686
Target:  5'- -uCGCUaCGGCGGCGGCgGUgGCgGUg -3'
miRNA:   3'- ucGCGAcGCCGCCGCCGgCGgUGgUA- -5'
19672 5' -66.7 NC_004686.1 + 15677 0.67 0.172221
Target:  5'- cGCGaUGCGGUGGCccGGCUGaCGCCGc -3'
miRNA:   3'- uCGCgACGCCGCCG--CCGGCgGUGGUa -5'
19672 5' -66.7 NC_004686.1 + 22126 0.67 0.172221
Target:  5'- uGGCGCgcGCGGCcucGGCGGCa-CCGCUGUc -3'
miRNA:   3'- -UCGCGa-CGCCG---CCGCCGgcGGUGGUA- -5'
19672 5' -66.7 NC_004686.1 + 11154 0.67 0.172221
Target:  5'- uGCGUUGCGuGCGGCGauCCG-CGCCGg -3'
miRNA:   3'- uCGCGACGC-CGCCGCc-GGCgGUGGUa -5'
19672 5' -66.7 NC_004686.1 + 25157 0.67 0.17222
Target:  5'- cGUGCUGUGGUcGCGGCCaagGCUGCUg- -3'
miRNA:   3'- uCGCGACGCCGcCGCCGG---CGGUGGua -5'
19672 5' -66.7 NC_004686.1 + 1970 0.67 0.167856
Target:  5'- uGGgGCUGUGuuccGCGGCguacuGGCUGCCACUg- -3'
miRNA:   3'- -UCgCGACGC----CGCCG-----CCGGCGGUGGua -5'
19672 5' -66.7 NC_004686.1 + 12149 0.67 0.163591
Target:  5'- cGGCGC--CGGCGGUcaGGCCGCgggGCCAg -3'
miRNA:   3'- -UCGCGacGCCGCCG--CCGGCGg--UGGUa -5'
19672 5' -66.7 NC_004686.1 + 28771 0.67 0.163591
Target:  5'- uGCGCggguuuuaUGCGGCGG-GuGUCGCCGCgGUg -3'
miRNA:   3'- uCGCG--------ACGCCGCCgC-CGGCGGUGgUA- -5'
19672 5' -66.7 NC_004686.1 + 6363 0.67 0.155353
Target:  5'- cAGcCGUUGCGGCGuGCGGUgucugCGUCGCuCAUg -3'
miRNA:   3'- -UC-GCGACGCCGC-CGCCG-----GCGGUG-GUA- -5'
19672 5' -66.7 NC_004686.1 + 48889 0.67 0.154951
Target:  5'- cAGgGCUacgccacGCGGaCGGCgcacggaaucuGGCCGCCGCCc- -3'
miRNA:   3'- -UCgCGA-------CGCC-GCCG-----------CCGGCGGUGGua -5'
19672 5' -66.7 NC_004686.1 + 29935 0.68 0.151376
Target:  5'- cAGUGCU-CGGCcugaucGGCaaGCCGCCGCCAc -3'
miRNA:   3'- -UCGCGAcGCCG------CCGc-CGGCGGUGGUa -5'
19672 5' -66.7 NC_004686.1 + 22749 0.68 0.147109
Target:  5'- cGGCGCcGCGGCuaucgcggucaccGGUGGUCaGCCcACCAUc -3'
miRNA:   3'- -UCGCGaCGCCG-------------CCGCCGG-CGG-UGGUA- -5'
19672 5' -66.7 NC_004686.1 + 3780 0.68 0.139995
Target:  5'- aAGCGCUGaGGUGGcCGGCCGguucuCCGCgAUc -3'
miRNA:   3'- -UCGCGACgCCGCC-GCCGGC-----GGUGgUA- -5'
19672 5' -66.7 NC_004686.1 + 7279 0.68 0.136379
Target:  5'- cGGCGagaaggGCGGCGGCcagauuccguGcGCCGuCCGCCGUg -3'
miRNA:   3'- -UCGCga----CGCCGCCG----------C-CGGC-GGUGGUA- -5'
19672 5' -66.7 NC_004686.1 + 52891 0.69 0.126041
Target:  5'- gGGCGCcaggaucaUGCGGCGcaUGGCuCGCCGCCu- -3'
miRNA:   3'- -UCGCG--------ACGCCGCc-GCCG-GCGGUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.