Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19676 | 5' | -60.1 | NC_004686.1 | + | 70 | 0.69 | 0.32123 |
Target: 5'- uCCGGGaucgUCGGCgGgcUGAgGUUCGCCGGCg -3' miRNA: 3'- cGGUCU----AGCCGgU--GCU-CAGGCGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 109 | 0.7 | 0.2717 |
Target: 5'- gGUCAGAggugcaCGGCguCGCGGGUCCaCCGGUc -3' miRNA: 3'- -CGGUCUa-----GCCG--GUGCUCAGGcGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 157 | 0.66 | 0.517065 |
Target: 5'- cGCCAGGcgacgCGGCCggguugGCGGGU--GCCGGg -3' miRNA: 3'- -CGGUCUa----GCCGG------UGCUCAggCGGCCg -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 409 | 0.66 | 0.473573 |
Target: 5'- cGCCGGG-CGGUCaaccgGCGGGUCCGagaggauagccgaUGGCu -3' miRNA: 3'- -CGGUCUaGCCGG-----UGCUCAGGCg------------GCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 2662 | 0.71 | 0.258723 |
Target: 5'- gGCCGGuUUGGUUGCGGGUUCGUuugUGGCg -3' miRNA: 3'- -CGGUCuAGCCGGUGCUCAGGCG---GCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 3964 | 0.67 | 0.458215 |
Target: 5'- aCCGGAUCaGcCCAgGAGgaUCCGCaGGCc -3' miRNA: 3'- cGGUCUAGcC-GGUgCUC--AGGCGgCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 5140 | 0.66 | 0.507032 |
Target: 5'- aGCCAGGaagucaagUgGGCUgACGAGUCuCGUcaacuCGGCg -3' miRNA: 3'- -CGGUCU--------AgCCGG-UGCUCAG-GCG-----GCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 5266 | 0.75 | 0.143472 |
Target: 5'- aCCGGugCGGCUcuguCGGGUUCGCCGGCg -3' miRNA: 3'- cGGUCuaGCCGGu---GCUCAGGCGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 5918 | 0.68 | 0.394368 |
Target: 5'- gGCCGG--UGGCUAUcGG-CUGCCGGCg -3' miRNA: 3'- -CGGUCuaGCCGGUGcUCaGGCGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 7103 | 0.66 | 0.483302 |
Target: 5'- aGCCGGcagggugcacggCGGCCACaAGgaCGCUGGCg -3' miRNA: 3'- -CGGUCua----------GCCGGUGcUCagGCGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 8549 | 0.68 | 0.360564 |
Target: 5'- aCgAGAUUcGCCGCcAGuUCCGCCGGUa -3' miRNA: 3'- cGgUCUAGcCGGUGcUC-AGGCGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 8977 | 0.67 | 0.420124 |
Target: 5'- gGUCAGGUUuccgaGGCCAgcccaucCGAGgaccuucgcUUCGCCGGCg -3' miRNA: 3'- -CGGUCUAG-----CCGGU-------GCUC---------AGGCGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 9705 | 0.66 | 0.487221 |
Target: 5'- -aCAGAUCGGCaacgauggagACGAGUuuGUCuGCg -3' miRNA: 3'- cgGUCUAGCCGg---------UGCUCAggCGGcCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 11121 | 0.68 | 0.360564 |
Target: 5'- uGUCGGGggacgugCGGCCaguguuugGCGAGgaUCUGUCGGCa -3' miRNA: 3'- -CGGUCUa------GCCGG--------UGCUC--AGGCGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 11200 | 0.67 | 0.458215 |
Target: 5'- uGCCGGcgCGuuCCAaacccaguuCGAGUCCGCCGauGCc -3' miRNA: 3'- -CGGUCuaGCc-GGU---------GCUCAGGCGGC--CG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 11971 | 0.66 | 0.497082 |
Target: 5'- -aCAGAUCGGgaCGaacUGAGggauacauucCCGCCGGCg -3' miRNA: 3'- cgGUCUAGCCg-GU---GCUCa---------GGCGGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 12152 | 0.71 | 0.252427 |
Target: 5'- cGCCGGcgGUCaGGCCGCGGGgCCaGCggCGGCg -3' miRNA: 3'- -CGGUC--UAG-CCGGUGCUCaGG-CG--GCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 12349 | 0.66 | 0.497082 |
Target: 5'- uGCCGG--CGGCCACGA---CGaCCGGUg -3' miRNA: 3'- -CGGUCuaGCCGGUGCUcagGC-GGCCG- -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 12796 | 0.77 | 0.093269 |
Target: 5'- aUCAGGggCGGCCAUGAGUCaGCCGGg -3' miRNA: 3'- cGGUCUa-GCCGGUGCUCAGgCGGCCg -5' |
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19676 | 5' | -60.1 | NC_004686.1 | + | 17249 | 0.66 | 0.517065 |
Target: 5'- uGCCAGcUC-GCCACGcuuGaUgCGCUGGCg -3' miRNA: 3'- -CGGUCuAGcCGGUGCu--C-AgGCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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