miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19676 5' -60.1 NC_004686.1 + 11971 0.66 0.497082
Target:  5'- -aCAGAUCGGgaCGaacUGAGggauacauucCCGCCGGCg -3'
miRNA:   3'- cgGUCUAGCCg-GU---GCUCa---------GGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 18747 0.67 0.430157
Target:  5'- cGUCGGGUCGGgCACGcacuacaUCCG-CGGCu -3'
miRNA:   3'- -CGGUCUAGCCgGUGCuc-----AGGCgGCCG- -5'
19676 5' -60.1 NC_004686.1 + 3964 0.67 0.458215
Target:  5'- aCCGGAUCaGcCCAgGAGgaUCCGCaGGCc -3'
miRNA:   3'- cGGUCUAGcC-GGUgCUC--AGGCGgCCG- -5'
19676 5' -60.1 NC_004686.1 + 39826 0.67 0.458215
Target:  5'- cCCGGucgUGGCU--GGGaCCGCCGGCa -3'
miRNA:   3'- cGGUCua-GCCGGugCUCaGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 409 0.66 0.473573
Target:  5'- cGCCGGG-CGGUCaaccgGCGGGUCCGagaggauagccgaUGGCu -3'
miRNA:   3'- -CGGUCUaGCCGG-----UGCUCAGGCg------------GCCG- -5'
19676 5' -60.1 NC_004686.1 + 18709 0.66 0.477453
Target:  5'- cGCgAGAUCaGCgACGAGUUCGa-GGUg -3'
miRNA:   3'- -CGgUCUAGcCGgUGCUCAGGCggCCG- -5'
19676 5' -60.1 NC_004686.1 + 7103 0.66 0.483302
Target:  5'- aGCCGGcagggugcacggCGGCCACaAGgaCGCUGGCg -3'
miRNA:   3'- -CGGUCua----------GCCGGUGcUCagGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 28846 0.66 0.491154
Target:  5'- -aCGGGUUGGCgGCGaAGUggucguugacgguguUCGCCGGUc -3'
miRNA:   3'- cgGUCUAGCCGgUGC-UCA---------------GGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 12349 0.66 0.497082
Target:  5'- uGCCGG--CGGCCACGA---CGaCCGGUg -3'
miRNA:   3'- -CGGUCuaGCCGGUGCUcagGC-GGCCG- -5'
19676 5' -60.1 NC_004686.1 + 17505 0.67 0.428322
Target:  5'- aGCCcuugaacuuguuGAUCgGGCCGCG-GUCguUGCUGGCg -3'
miRNA:   3'- -CGGu-----------CUAG-CCGGUGCuCAG--GCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 28031 0.68 0.403134
Target:  5'- aGCCGcuGAagCGGUguUGGcGUCCGUCGGCa -3'
miRNA:   3'- -CGGU--CUa-GCCGguGCU-CAGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 5918 0.68 0.394368
Target:  5'- gGCCGG--UGGCUAUcGG-CUGCCGGCg -3'
miRNA:   3'- -CGGUCuaGCCGGUGcUCaGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 12796 0.77 0.093269
Target:  5'- aUCAGGggCGGCCAUGAGUCaGCCGGg -3'
miRNA:   3'- cGGUCUa-GCCGGUGCUCAGgCGGCCg -5'
19676 5' -60.1 NC_004686.1 + 5266 0.75 0.143472
Target:  5'- aCCGGugCGGCUcuguCGGGUUCGCCGGCg -3'
miRNA:   3'- cGGUCuaGCCGGu---GCUCAGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 12152 0.71 0.252427
Target:  5'- cGCCGGcgGUCaGGCCGCGGGgCCaGCggCGGCg -3'
miRNA:   3'- -CGGUC--UAG-CCGGUGCUCaGG-CG--GCCG- -5'
19676 5' -60.1 NC_004686.1 + 70 0.69 0.32123
Target:  5'- uCCGGGaucgUCGGCgGgcUGAgGUUCGCCGGCg -3'
miRNA:   3'- cGGUCU----AGCCGgU--GCU-CAGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 8549 0.68 0.360564
Target:  5'- aCgAGAUUcGCCGCcAGuUCCGCCGGUa -3'
miRNA:   3'- cGgUCUAGcCGGUGcUC-AGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 44167 0.68 0.360564
Target:  5'- uGCCGGAcCGGgCAUGGGUgaucucacaaCCGCauuCGGCa -3'
miRNA:   3'- -CGGUCUaGCCgGUGCUCA----------GGCG---GCCG- -5'
19676 5' -60.1 NC_004686.1 + 26477 0.68 0.385727
Target:  5'- uGCCAcccgcgucAUCGGCCACaagGAGUggGCCGGUg -3'
miRNA:   3'- -CGGUc-------UAGCCGGUG---CUCAggCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 42802 0.68 0.385727
Target:  5'- aGCCAGGcaggCGGacgccUCAUGAGU-CGCCGGUu -3'
miRNA:   3'- -CGGUCUa---GCC-----GGUGCUCAgGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.