Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19684 | 3' | -54.7 | NC_004686.1 | + | 2125 | 0.67 | 0.64959 |
Target: 5'- cCGCCCgucugggaACAGUCGCgcaACGCAUCGGc -3' miRNA: 3'- aGUGGGag------UGUCGGUGg--UGUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 10190 | 0.66 | 0.730588 |
Target: 5'- aUCAagccUCCUCGCAGucugcgcauccguuuCCGCCGCACAccUCAc -3' miRNA: 3'- -AGU----GGGAGUGUC---------------GGUGGUGUGU--AGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 13498 | 0.66 | 0.715542 |
Target: 5'- -gGCCUUCGCAucCCGCCACAacccCGUCAa -3' miRNA: 3'- agUGGGAGUGUc-GGUGGUGU----GUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 16139 | 0.66 | 0.736977 |
Target: 5'- -aGCCUUCACA-CCGCUACcGgGUCAGa -3' miRNA: 3'- agUGGGAGUGUcGGUGGUG-UgUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 16424 | 0.67 | 0.693771 |
Target: 5'- gCACCC-CACcGUCGCCGCgGCGUCc- -3' miRNA: 3'- aGUGGGaGUGuCGGUGGUG-UGUAGuc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 19072 | 0.67 | 0.693771 |
Target: 5'- cUCAgCCUcCACAGCCACaagaACAUCc- -3' miRNA: 3'- -AGUgGGA-GUGUCGGUGgug-UGUAGuc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 19865 | 0.7 | 0.517914 |
Target: 5'- aUCACCCUgggaCGCAGCCGCUcaACcUCGGc -3' miRNA: 3'- -AGUGGGA----GUGUCGGUGGugUGuAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 20024 | 0.68 | 0.638476 |
Target: 5'- -aACCgUUCACGGCCACCGC-CGUg-- -3' miRNA: 3'- agUGG-GAGUGUCGGUGGUGuGUAguc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 21610 | 0.69 | 0.528589 |
Target: 5'- cCGCCCUCACcuGCUGCaCACAgGUgGGg -3' miRNA: 3'- aGUGGGAGUGu-CGGUG-GUGUgUAgUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 22330 | 0.83 | 0.077178 |
Target: 5'- cUCGCCCUCGCGGCCGgCCuuCGCGUCAc -3' miRNA: 3'- -AGUGGGAGUGUCGGU-GGu-GUGUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 22369 | 0.68 | 0.638476 |
Target: 5'- gUCGCCgUCGCAGCC-CUGCagaGCAUgGGc -3' miRNA: 3'- -AGUGGgAGUGUCGGuGGUG---UGUAgUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 22553 | 0.68 | 0.627357 |
Target: 5'- -aACCCgcCGCAGCCGCCcuCAcCAUCAc -3' miRNA: 3'- agUGGGa-GUGUCGGUGGu-GU-GUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 23661 | 0.7 | 0.465963 |
Target: 5'- cUCACCCUgACGGgCACCACgaGCGUg-- -3' miRNA: 3'- -AGUGGGAgUGUCgGUGGUG--UGUAguc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 23877 | 0.66 | 0.747539 |
Target: 5'- uUCACUCUgGCuuagcuacgucgAGCCAuCCAgGCGUCAa -3' miRNA: 3'- -AGUGGGAgUG------------UCGGU-GGUgUGUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 23932 | 0.66 | 0.747539 |
Target: 5'- -aACCCUugaCGCGGCCGacaAgGCAUCGGg -3' miRNA: 3'- agUGGGA---GUGUCGGUgg-UgUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 25035 | 0.68 | 0.601815 |
Target: 5'- cUCGCCCUCaucgcccagcacgaGCAGCaCACC-CACAaguacggaaccUCAGu -3' miRNA: 3'- -AGUGGGAG--------------UGUCG-GUGGuGUGU-----------AGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 27034 | 0.72 | 0.371021 |
Target: 5'- aCACCCccaCAUAGCCAucaauCCACGgAUCAGa -3' miRNA: 3'- aGUGGGa--GUGUCGGU-----GGUGUgUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 30011 | 0.86 | 0.045546 |
Target: 5'- -aACCCUCACAaCCACCACACAUCAc -3' miRNA: 3'- agUGGGAGUGUcGGUGGUGUGUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 30324 | 1.1 | 0.000862 |
Target: 5'- aUCACCCUCACAGCCACCACACAUCAGg -3' miRNA: 3'- -AGUGGGAGUGUCGGUGGUGUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 30596 | 0.69 | 0.526447 |
Target: 5'- uUCAgCCaucguugggaacCACAaCCACCACACAUCAGc -3' miRNA: 3'- -AGUgGGa-----------GUGUcGGUGGUGUGUAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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