Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19684 | 3' | -54.7 | NC_004686.1 | + | 30324 | 1.1 | 0.000862 |
Target: 5'- aUCACCCUCACAGCCACCACACAUCAGg -3' miRNA: 3'- -AGUGGGAGUGUCGGUGGUGUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 23932 | 0.66 | 0.747539 |
Target: 5'- -aACCCUugaCGCGGCCGacaAgGCAUCGGg -3' miRNA: 3'- agUGGGA---GUGUCGGUgg-UgUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 23877 | 0.66 | 0.747539 |
Target: 5'- uUCACUCUgGCuuagcuacgucgAGCCAuCCAgGCGUCAa -3' miRNA: 3'- -AGUGGGAgUG------------UCGGU-GGUgUGUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 16139 | 0.66 | 0.736977 |
Target: 5'- -aGCCUUCACA-CCGCUACcGgGUCAGa -3' miRNA: 3'- agUGGGAGUGUcGGUGGUG-UgUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 55905 | 0.66 | 0.715542 |
Target: 5'- aCAUgCUCaACAGCCugccgccCCGCACAUCc- -3' miRNA: 3'- aGUGgGAG-UGUCGGu------GGUGUGUAGuc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 33278 | 0.67 | 0.693771 |
Target: 5'- uUCACCCcaagaUCAacaGGCCAagauaagacCCAuCACGUCGGg -3' miRNA: 3'- -AGUGGG-----AGUg--UCGGU---------GGU-GUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 2125 | 0.67 | 0.64959 |
Target: 5'- cCGCCCgucugggaACAGUCGCgcaACGCAUCGGc -3' miRNA: 3'- aGUGGGag------UGUCGGUGg--UGUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 38069 | 0.68 | 0.638476 |
Target: 5'- cCGCCCguUC-CuGCCGCCGCAcCAUUGGg -3' miRNA: 3'- aGUGGG--AGuGuCGGUGGUGU-GUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 20024 | 0.68 | 0.638476 |
Target: 5'- -aACCgUUCACGGCCACCGC-CGUg-- -3' miRNA: 3'- agUGG-GAGUGUCGGUGGUGuGUAguc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 43739 | 0.68 | 0.627357 |
Target: 5'- gCACgCaacCugGGCCGCCGCGcCAUCGGc -3' miRNA: 3'- aGUGgGa--GugUCGGUGGUGU-GUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 30011 | 0.86 | 0.045546 |
Target: 5'- -aACCCUCACAaCCACCACACAUCAc -3' miRNA: 3'- agUGGGAGUGUcGGUGGUGUGUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 23661 | 0.7 | 0.465963 |
Target: 5'- cUCACCCUgACGGgCACCACgaGCGUg-- -3' miRNA: 3'- -AGUGGGAgUGUCgGUGGUG--UGUAguc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 50655 | 0.7 | 0.517914 |
Target: 5'- aCGCCCUgAUcGCCAUCGCACAacuacUCAa -3' miRNA: 3'- aGUGGGAgUGuCGGUGGUGUGU-----AGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 30596 | 0.69 | 0.526447 |
Target: 5'- uUCAgCCaucguugggaacCACAaCCACCACACAUCAGc -3' miRNA: 3'- -AGUgGGa-----------GUGUcGGUGGUGUGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 25035 | 0.68 | 0.601815 |
Target: 5'- cUCGCCCUCaucgcccagcacgaGCAGCaCACC-CACAaguacggaaccUCAGu -3' miRNA: 3'- -AGUGGGAG--------------UGUCG-GUGGuGUGU-----------AGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 22553 | 0.68 | 0.627357 |
Target: 5'- -aACCCgcCGCAGCCGCCcuCAcCAUCAc -3' miRNA: 3'- agUGGGa-GUGUCGGUGGu-GU-GUAGUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 44403 | 0.66 | 0.747539 |
Target: 5'- gCGCCCUUcgcccCAGCC-CCAUACAUgGa -3' miRNA: 3'- aGUGGGAGu----GUCGGuGGUGUGUAgUc -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 27034 | 0.72 | 0.371021 |
Target: 5'- aCACCCccaCAUAGCCAucaauCCACGgAUCAGa -3' miRNA: 3'- aGUGGGa--GUGUCGGU-----GGUGUgUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 38745 | 0.7 | 0.465963 |
Target: 5'- aCACCUcgCGCGGCUGCaCAC-CGUCAGa -3' miRNA: 3'- aGUGGGa-GUGUCGGUG-GUGuGUAGUC- -5' |
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19684 | 3' | -54.7 | NC_004686.1 | + | 44864 | 0.7 | 0.496832 |
Target: 5'- aUCGCCC-CACuuGCCGCCuuCACuccaGUCAGg -3' miRNA: 3'- -AGUGGGaGUGu-CGGUGGu-GUG----UAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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