Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19702 | 5' | -56.4 | NC_004686.1 | + | 95 | 0.67 | 0.623324 |
Target: 5'- uCGCCGgcgugaCGggGACGCUc-CGUGuGCGUUg -3' miRNA: 3'- -GCGGC------GCuuCUGUGGuuGCAC-CGCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 2142 | 0.7 | 0.436534 |
Target: 5'- uCGCgGCGAAcaGCGCUggUGUGGCGg- -3' miRNA: 3'- -GCGgCGCUUc-UGUGGuuGCACCGCag -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 3086 | 0.66 | 0.688309 |
Target: 5'- aGCCGCGGAuGCACCAccagauGCGUGuGaGUa -3' miRNA: 3'- gCGGCGCUUcUGUGGU------UGCAC-CgCAg -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 3724 | 0.67 | 0.612463 |
Target: 5'- aCGUggaGCGAAGcCGCCAugGcGGCGg- -3' miRNA: 3'- -GCGg--CGCUUCuGUGGUugCaCCGCag -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 4542 | 0.74 | 0.265415 |
Target: 5'- cCGCUGCGgcGGCACCGACcucuucagGGaCGUCg -3' miRNA: 3'- -GCGGCGCuuCUGUGGUUGca------CC-GCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 5528 | 0.76 | 0.199775 |
Target: 5'- aCGCgGCGGugucGGACACCGucCGUGGCGg- -3' miRNA: 3'- -GCGgCGCU----UCUGUGGUu-GCACCGCag -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 9859 | 0.67 | 0.623324 |
Target: 5'- aCGCCGCGgcGAUcgcucaaacgucGCuCGACGauaUGGgGUCg -3' miRNA: 3'- -GCGGCGCuuCUG------------UG-GUUGC---ACCgCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 10596 | 0.71 | 0.364213 |
Target: 5'- cCGCCGCGcAGGuCGCCGAUGcuuugGGCGa- -3' miRNA: 3'- -GCGGCGC-UUCuGUGGUUGCa----CCGCag -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 12164 | 0.7 | 0.417679 |
Target: 5'- gGCCGCGggG---CCAGCGgcGGCGUUc -3' miRNA: 3'- gCGGCGCuuCuguGGUUGCa-CCGCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 13224 | 0.68 | 0.526874 |
Target: 5'- aGCC-CGuuGGACGCC-ACGuUGGUGUCu -3' miRNA: 3'- gCGGcGCu-UCUGUGGuUGC-ACCGCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 13691 | 0.67 | 0.612463 |
Target: 5'- aGCCGCGGcgcuGGuccCGCC--CGUGGgGUCa -3' miRNA: 3'- gCGGCGCU----UCu--GUGGuuGCACCgCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 14090 | 0.75 | 0.210558 |
Target: 5'- -aCCGCGAAGACGgUGACGUGGuCGUg -3' miRNA: 3'- gcGGCGCUUCUGUgGUUGCACC-GCAg -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 14942 | 0.68 | 0.537374 |
Target: 5'- aGCCccucuaCGAGGACACCAuacuuGCGggugGaGCGUCa -3' miRNA: 3'- gCGGc-----GCUUCUGUGGU-----UGCa---C-CGCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 16435 | 0.68 | 0.55858 |
Target: 5'- uCGCCGCGGcguccguguaggAGGCGCCGuCGUcgagcaGGCGg- -3' miRNA: 3'- -GCGGCGCU------------UCUGUGGUuGCA------CCGCag -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 16740 | 0.69 | 0.46571 |
Target: 5'- gGCCGCGGAaauGCGCCGAgauCGUGGCc-- -3' miRNA: 3'- gCGGCGCUUc--UGUGGUU---GCACCGcag -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 21175 | 0.73 | 0.296207 |
Target: 5'- gCGCCGCGggGgcugGCACUggUucagcgcagacguuuGUGGUGUCg -3' miRNA: 3'- -GCGGCGCuuC----UGUGGuuG---------------CACCGCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 21264 | 0.67 | 0.634193 |
Target: 5'- gGCC-CG--GugACCAAUGUGGgGUCu -3' miRNA: 3'- gCGGcGCuuCugUGGUUGCACCgCAG- -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 21830 | 0.66 | 0.67755 |
Target: 5'- gCGCCuCGgcGGCGCgGGCGcgGGCGg- -3' miRNA: 3'- -GCGGcGCuuCUGUGgUUGCa-CCGCag -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 26836 | 0.7 | 0.408439 |
Target: 5'- uGCCGuCGAAG-CACuCGAUGuUGGCGUg -3' miRNA: 3'- gCGGC-GCUUCuGUG-GUUGC-ACCGCAg -5' |
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19702 | 5' | -56.4 | NC_004686.1 | + | 27459 | 0.68 | 0.537374 |
Target: 5'- gCGCCGCGccaAGGACGCUAucuguGCGUGGgCa-- -3' miRNA: 3'- -GCGGCGC---UUCUGUGGU-----UGCACC-Gcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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