miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19702 5' -56.4 NC_004686.1 + 21264 0.67 0.634193
Target:  5'- gGCC-CG--GugACCAAUGUGGgGUCu -3'
miRNA:   3'- gCGGcGCuuCugUGGUUGCACCgCAG- -5'
19702 5' -56.4 NC_004686.1 + 43246 0.67 0.578939
Target:  5'- uGCCGCGGacgugcuggucacAGACccGCCAuACG-GGCGUg -3'
miRNA:   3'- gCGGCGCU-------------UCUG--UGGU-UGCaCCGCAg -5'
19702 5' -56.4 NC_004686.1 + 50457 0.67 0.584325
Target:  5'- gGCCGCauguuccccuGGGACACCcugucGgagcuggagaaggauGCGUGGCGUCg -3'
miRNA:   3'- gCGGCGc---------UUCUGUGG-----U---------------UGCACCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 51102 0.67 0.5908
Target:  5'- cCGCCGCGAggcuguaccuGGACAgCCugGACuGUGGUGg- -3'
miRNA:   3'- -GCGGCGCU----------UCUGU-GG--UUG-CACCGCag -5'
19702 5' -56.4 NC_004686.1 + 3724 0.67 0.612463
Target:  5'- aCGUggaGCGAAGcCGCCAugGcGGCGg- -3'
miRNA:   3'- -GCGg--CGCUUCuGUGGUugCaCCGCag -5'
19702 5' -56.4 NC_004686.1 + 13691 0.67 0.612463
Target:  5'- aGCCGCGGcgcuGGuccCGCC--CGUGGgGUCa -3'
miRNA:   3'- gCGGCGCU----UCu--GUGGuuGCACCgCAG- -5'
19702 5' -56.4 NC_004686.1 + 95 0.67 0.623324
Target:  5'- uCGCCGgcgugaCGggGACGCUc-CGUGuGCGUUg -3'
miRNA:   3'- -GCGGC------GCuuCUGUGGuuGCAC-CGCAG- -5'
19702 5' -56.4 NC_004686.1 + 9859 0.67 0.623324
Target:  5'- aCGCCGCGgcGAUcgcucaaacgucGCuCGACGauaUGGgGUCg -3'
miRNA:   3'- -GCGGCGCuuCUG------------UG-GUUGC---ACCgCAG- -5'
19702 5' -56.4 NC_004686.1 + 54071 0.67 0.623324
Target:  5'- uCGCCGCGA---CAUC-GCGuUGGCGUUg -3'
miRNA:   3'- -GCGGCGCUucuGUGGuUGC-ACCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 35246 0.68 0.562851
Target:  5'- gCGCCgagcuggcugagGCGAAGGCGuuggaguugucgguuCCGGCGUcGGCGUg -3'
miRNA:   3'- -GCGG------------CGCUUCUGU---------------GGUUGCA-CCGCAg -5'
19702 5' -56.4 NC_004686.1 + 27459 0.68 0.537374
Target:  5'- gCGCCGCGccaAGGACGCUAucuguGCGUGGgCa-- -3'
miRNA:   3'- -GCGGCGC---UUCUGUGGU-----UGCACC-Gcag -5'
19702 5' -56.4 NC_004686.1 + 14942 0.68 0.537374
Target:  5'- aGCCccucuaCGAGGACACCAuacuuGCGggugGaGCGUCa -3'
miRNA:   3'- gCGGc-----GCUUCUGUGGU-----UGCa---C-CGCAG- -5'
19702 5' -56.4 NC_004686.1 + 37370 0.81 0.090269
Target:  5'- uCGCCGCGAugAGGCAgCAGCGUgaGGUGUCc -3'
miRNA:   3'- -GCGGCGCU--UCUGUgGUUGCA--CCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 5528 0.76 0.199775
Target:  5'- aCGCgGCGGugucGGACACCGucCGUGGCGg- -3'
miRNA:   3'- -GCGgCGCU----UCUGUGGUu-GCACCGCag -5'
19702 5' -56.4 NC_004686.1 + 14090 0.75 0.210558
Target:  5'- -aCCGCGAAGACGgUGACGUGGuCGUg -3'
miRNA:   3'- gcGGCGCUUCUGUgGUUGCACC-GCAg -5'
19702 5' -56.4 NC_004686.1 + 36443 0.73 0.272178
Target:  5'- gGCgGUGAAGGC-CCAugGUGGCaaacGUCu -3'
miRNA:   3'- gCGgCGCUUCUGuGGUugCACCG----CAG- -5'
19702 5' -56.4 NC_004686.1 + 21175 0.73 0.296207
Target:  5'- gCGCCGCGggGgcugGCACUggUucagcgcagacguuuGUGGUGUCg -3'
miRNA:   3'- -GCGGCGCuuC----UGUGGuuG---------------CACCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 10596 0.71 0.364213
Target:  5'- cCGCCGCGcAGGuCGCCGAUGcuuugGGCGa- -3'
miRNA:   3'- -GCGGCGC-UUCuGUGGUUGCa----CCGCag -5'
19702 5' -56.4 NC_004686.1 + 12164 0.7 0.417679
Target:  5'- gGCCGCGggG---CCAGCGgcGGCGUUc -3'
miRNA:   3'- gCGGCGCuuCuguGGUUGCa-CCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 44077 0.68 0.520612
Target:  5'- gGgCGUGGAGAaACCAgcagccguauucggaACGUGGCGUg -3'
miRNA:   3'- gCgGCGCUUCUgUGGU---------------UGCACCGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.