miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19711 3' -52.4 NC_004686.1 + 27676 0.68 0.768973
Target:  5'- uGGGUcgGUGGUCcgaccgcgauccuGACGCGGguGCuGUCgCu -3'
miRNA:   3'- -CCUA--UACCAG-------------UUGUGCCguCG-CAGgG- -5'
19711 3' -52.4 NC_004686.1 + 29007 0.85 0.092413
Target:  5'- cGGUGUGGUucuugaacggCAACGCGGUGGUGUCCCa -3'
miRNA:   3'- cCUAUACCA----------GUUGUGCCGUCGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 31562 0.7 0.673667
Target:  5'- cGGGgcUGGUC---ACGGCAGCcUCCUg -3'
miRNA:   3'- -CCUauACCAGuugUGCCGUCGcAGGG- -5'
19711 3' -52.4 NC_004686.1 + 31729 0.69 0.717378
Target:  5'- aGGugucgGUGGUCucGACAUGGUGGCGgCCg -3'
miRNA:   3'- -CCua---UACCAG--UUGUGCCGUCGCaGGg -5'
19711 3' -52.4 NC_004686.1 + 36161 0.69 0.728121
Target:  5'- uGGAUugccaUCAACACGGCGGUGgCCg -3'
miRNA:   3'- -CCUAuacc-AGUUGUGCCGUCGCaGGg -5'
19711 3' -52.4 NC_004686.1 + 36316 0.74 0.467854
Target:  5'- cGAgcUGGUCGccgagguugaGCGGCuGCGUCCCa -3'
miRNA:   3'- cCUauACCAGUug--------UGCCGuCGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 37046 0.67 0.82824
Target:  5'- uGGAUccGUGGUUGGCGCGccuGgAGCGUCaggCCa -3'
miRNA:   3'- -CCUA--UACCAGUUGUGC---CgUCGCAG---GG- -5'
19711 3' -52.4 NC_004686.1 + 39667 0.72 0.563034
Target:  5'- cGGGUGagGGUgCGGCACGGCAucagccGCGgcgaagCCCa -3'
miRNA:   3'- -CCUAUa-CCA-GUUGUGCCGU------CGCa-----GGG- -5'
19711 3' -52.4 NC_004686.1 + 40302 0.67 0.82824
Target:  5'- -cGUGUGGUCGGCACuucauCGGCGUCa- -3'
miRNA:   3'- ccUAUACCAGUUGUGcc---GUCGCAGgg -5'
19711 3' -52.4 NC_004686.1 + 40843 0.66 0.893879
Target:  5'- uGGAUGUGGUgAACAaaGCGuUGUCgCg -3'
miRNA:   3'- -CCUAUACCAgUUGUgcCGUcGCAGgG- -5'
19711 3' -52.4 NC_004686.1 + 41149 0.66 0.863016
Target:  5'- gGGAUgcgAUGGUguACGCcuuguuGGCAcCGUCCUg -3'
miRNA:   3'- -CCUA---UACCAguUGUG------CCGUcGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 41721 0.67 0.837272
Target:  5'- aGGUAgcgGGUgCAcuGCACGGacaguuCGGCGUCCUc -3'
miRNA:   3'- cCUAUa--CCA-GU--UGUGCC------GUCGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 42906 0.7 0.673667
Target:  5'- -aAUAUGGcgUCGACACGuGCGGCuUCUCa -3'
miRNA:   3'- ccUAUACC--AGUUGUGC-CGUCGcAGGG- -5'
19711 3' -52.4 NC_004686.1 + 43762 0.67 0.809554
Target:  5'- uGAUGUGGcaUCGGCGgaGGCuGCuGUCCUa -3'
miRNA:   3'- cCUAUACC--AGUUGUg-CCGuCG-CAGGG- -5'
19711 3' -52.4 NC_004686.1 + 46722 1.15 0.000898
Target:  5'- cGGAUAUGGUCAACACGGCAGCGUCCCu -3'
miRNA:   3'- -CCUAUACCAGUUGUGCCGUCGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 47305 0.66 0.886554
Target:  5'- aGGA---GGUCGGCGCGGaUGGCcccCCCg -3'
miRNA:   3'- -CCUauaCCAGUUGUGCC-GUCGca-GGG- -5'
19711 3' -52.4 NC_004686.1 + 48957 0.66 0.886554
Target:  5'- cGGAUGccGGUgAGCACacccGgGGCGUCCg -3'
miRNA:   3'- -CCUAUa-CCAgUUGUGc---CgUCGCAGGg -5'
19711 3' -52.4 NC_004686.1 + 50638 0.67 0.818997
Target:  5'- -----cGGUCGACGCGGUcacAGCcUCCg -3'
miRNA:   3'- ccuauaCCAGUUGUGCCG---UCGcAGGg -5'
19711 3' -52.4 NC_004686.1 + 54911 0.68 0.769995
Target:  5'- -----cGG---GCGCGGCGGCGUaCCCa -3'
miRNA:   3'- ccuauaCCaguUGUGCCGUCGCA-GGG- -5'
19711 3' -52.4 NC_004686.1 + 56002 0.66 0.885058
Target:  5'- cGAUGUGGUCAaccucgaacgaACGCGGaugaggcgcacgAGCGUCa- -3'
miRNA:   3'- cCUAUACCAGU-----------UGUGCCg-----------UCGCAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.