miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19711 3' -52.4 NC_004686.1 + 103 0.68 0.799921
Target:  5'- uGGUcUGGUCAgagguGCACGGCGucGCGggUCCa -3'
miRNA:   3'- cCUAuACCAGU-----UGUGCCGU--CGCa-GGG- -5'
19711 3' -52.4 NC_004686.1 + 412 0.69 0.728121
Target:  5'- cGGGc--GGUCAAC-CGGCGG-GUCCg -3'
miRNA:   3'- -CCUauaCCAGUUGuGCCGUCgCAGGg -5'
19711 3' -52.4 NC_004686.1 + 1019 0.7 0.695648
Target:  5'- cGGAUuUGGUgGGCGuCGGCGGC-UgCCg -3'
miRNA:   3'- -CCUAuACCAgUUGU-GCCGUCGcAgGG- -5'
19711 3' -52.4 NC_004686.1 + 2525 0.71 0.607107
Target:  5'- --uUGUGGcugcgaugCAGCACGGUccGGCGUUCCu -3'
miRNA:   3'- ccuAUACCa-------GUUGUGCCG--UCGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 2758 0.69 0.717378
Target:  5'- uGGUGUGGUCAcaGCGGUgAGgGUCgCCc -3'
miRNA:   3'- cCUAUACCAGUugUGCCG-UCgCAG-GG- -5'
19711 3' -52.4 NC_004686.1 + 4655 0.68 0.79011
Target:  5'- aGGGUGuUGGUg---GCGGCGuugagcGCGUCCCa -3'
miRNA:   3'- -CCUAU-ACCAguugUGCCGU------CGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 9094 0.72 0.53699
Target:  5'- gGGAgcgaacUGG-CAACGCGGCGGCGguaagggaacacgCCCc -3'
miRNA:   3'- -CCUau----ACCaGUUGUGCCGUCGCa------------GGG- -5'
19711 3' -52.4 NC_004686.1 + 11190 0.74 0.437964
Target:  5'- cGGAUucuccaaugGUGGUgcgaucaAGCAgGGCGGCGUUCCg -3'
miRNA:   3'- -CCUA---------UACCAg------UUGUgCCGUCGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 11766 0.67 0.846085
Target:  5'- ---cGUGGagAACGCgGGCAGCG-CCg -3'
miRNA:   3'- ccuaUACCagUUGUG-CCGUCGCaGGg -5'
19711 3' -52.4 NC_004686.1 + 11873 0.67 0.818997
Target:  5'- gGGAcAUGcagCAGCACGGCA-UGUCCg -3'
miRNA:   3'- -CCUaUACca-GUUGUGCCGUcGCAGGg -5'
19711 3' -52.4 NC_004686.1 + 15546 0.67 0.837272
Target:  5'- cGAUAU--UCAguGCAgUGGCAGCGuUCCCg -3'
miRNA:   3'- cCUAUAccAGU--UGU-GCCGUCGC-AGGG- -5'
19711 3' -52.4 NC_004686.1 + 15581 0.71 0.629311
Target:  5'- ----cUGGUCgAACGUGGCGGCGUCgCa -3'
miRNA:   3'- ccuauACCAG-UUGUGCCGUCGCAGgG- -5'
19711 3' -52.4 NC_004686.1 + 16994 0.68 0.78013
Target:  5'- cGGg---GGUCAggACACGGCcggucauGCGcCCCa -3'
miRNA:   3'- -CCuauaCCAGU--UGUGCCGu------CGCaGGG- -5'
19711 3' -52.4 NC_004686.1 + 18270 0.88 0.058051
Target:  5'- uGGGUuggugGGUCAGCACGGCAGCGgggcgagccUCCCg -3'
miRNA:   3'- -CCUAua---CCAGUUGUGCCGUCGC---------AGGG- -5'
19711 3' -52.4 NC_004686.1 + 18946 0.69 0.738765
Target:  5'- uGGAg--GGUCccGGCGCGGgAGCGggggaaccaugCCCg -3'
miRNA:   3'- -CCUauaCCAG--UUGUGCCgUCGCa----------GGG- -5'
19711 3' -52.4 NC_004686.1 + 19049 0.67 0.818997
Target:  5'- cGGGUcgGGUgcUGGC-CGGCAGgCGUCUUu -3'
miRNA:   3'- -CCUAuaCCA--GUUGuGCCGUC-GCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 19207 0.7 0.673667
Target:  5'- cGGGUGUGGgCGGCaAUGGUGGCGaCaCCg -3'
miRNA:   3'- -CCUAUACCaGUUG-UGCCGUCGCaG-GG- -5'
19711 3' -52.4 NC_004686.1 + 21014 0.66 0.893879
Target:  5'- cGAUcaGG-CAGCGCaauauccguaucGGCGGCGUaCCCa -3'
miRNA:   3'- cCUAuaCCaGUUGUG------------CCGUCGCA-GGG- -5'
19711 3' -52.4 NC_004686.1 + 21281 0.67 0.846085
Target:  5'- gGGGUcUGuGUCGgugaacuuuggGCAgGGCA-CGUCCCa -3'
miRNA:   3'- -CCUAuAC-CAGU-----------UGUgCCGUcGCAGGG- -5'
19711 3' -52.4 NC_004686.1 + 22766 0.67 0.818997
Target:  5'- gGGAUGUaGUCgAACGCGGC-GCGUaUCUg -3'
miRNA:   3'- -CCUAUAcCAG-UUGUGCCGuCGCA-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.