Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19711 | 3' | -52.4 | NC_004686.1 | + | 46722 | 1.15 | 0.000898 |
Target: 5'- cGGAUAUGGUCAACACGGCAGCGUCCCu -3' miRNA: 3'- -CCUAUACCAGUUGUGCCGUCGCAGGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 40843 | 0.66 | 0.893879 |
Target: 5'- uGGAUGUGGUgAACAaaGCGuUGUCgCg -3' miRNA: 3'- -CCUAUACCAgUUGUgcCGUcGCAGgG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 21281 | 0.67 | 0.846085 |
Target: 5'- gGGGUcUGuGUCGgugaacuuuggGCAgGGCA-CGUCCCa -3' miRNA: 3'- -CCUAuAC-CAGU-----------UGUgCCGUcGCAGGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 11766 | 0.67 | 0.846085 |
Target: 5'- ---cGUGGagAACGCgGGCAGCG-CCg -3' miRNA: 3'- ccuaUACCagUUGUG-CCGUCGCaGGg -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 40302 | 0.67 | 0.82824 |
Target: 5'- -cGUGUGGUCGGCACuucauCGGCGUCa- -3' miRNA: 3'- ccUAUACCAGUUGUGcc---GUCGCAGgg -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 37046 | 0.67 | 0.82824 |
Target: 5'- uGGAUccGUGGUUGGCGCGccuGgAGCGUCaggCCa -3' miRNA: 3'- -CCUA--UACCAGUUGUGC---CgUCGCAG---GG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 19049 | 0.67 | 0.818997 |
Target: 5'- cGGGUcgGGUgcUGGC-CGGCAGgCGUCUUu -3' miRNA: 3'- -CCUAuaCCA--GUUGuGCCGUC-GCAGGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 11873 | 0.67 | 0.818997 |
Target: 5'- gGGAcAUGcagCAGCACGGCA-UGUCCg -3' miRNA: 3'- -CCUaUACca-GUUGUGCCGUcGCAGGg -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 27676 | 0.68 | 0.768973 |
Target: 5'- uGGGUcgGUGGUCcgaccgcgauccuGACGCGGguGCuGUCgCu -3' miRNA: 3'- -CCUA--UACCAG-------------UUGUGCCguCG-CAGgG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 412 | 0.69 | 0.728121 |
Target: 5'- cGGGc--GGUCAAC-CGGCGG-GUCCg -3' miRNA: 3'- -CCUauaCCAGUUGuGCCGUCgCAGGg -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 18270 | 0.88 | 0.058051 |
Target: 5'- uGGGUuggugGGUCAGCACGGCAGCGgggcgagccUCCCg -3' miRNA: 3'- -CCUAua---CCAGUUGUGCCGUCGC---------AGGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 11190 | 0.74 | 0.437964 |
Target: 5'- cGGAUucuccaaugGUGGUgcgaucaAGCAgGGCGGCGUUCCg -3' miRNA: 3'- -CCUA---------UACCAg------UUGUgCCGUCGCAGGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 36316 | 0.74 | 0.467854 |
Target: 5'- cGAgcUGGUCGccgagguugaGCGGCuGCGUCCCa -3' miRNA: 3'- cCUauACCAGUug--------UGCCGuCGCAGGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 9094 | 0.72 | 0.53699 |
Target: 5'- gGGAgcgaacUGG-CAACGCGGCGGCGguaagggaacacgCCCc -3' miRNA: 3'- -CCUau----ACCaGUUGUGCCGUCGCa------------GGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 39667 | 0.72 | 0.563034 |
Target: 5'- cGGGUGagGGUgCGGCACGGCAucagccGCGgcgaagCCCa -3' miRNA: 3'- -CCUAUa-CCA-GUUGUGCCGU------CGCa-----GGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 2525 | 0.71 | 0.607107 |
Target: 5'- --uUGUGGcugcgaugCAGCACGGUccGGCGUUCCu -3' miRNA: 3'- ccuAUACCa-------GUUGUGCCG--UCGCAGGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 19207 | 0.7 | 0.673667 |
Target: 5'- cGGGUGUGGgCGGCaAUGGUGGCGaCaCCg -3' miRNA: 3'- -CCUAUACCaGUUG-UGCCGUCGCaG-GG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 21014 | 0.66 | 0.893879 |
Target: 5'- cGAUcaGG-CAGCGCaauauccguaucGGCGGCGUaCCCa -3' miRNA: 3'- cCUAuaCCaGUUGUG------------CCGUCGCA-GGG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 15581 | 0.71 | 0.629311 |
Target: 5'- ----cUGGUCgAACGUGGCGGCGUCgCa -3' miRNA: 3'- ccuauACCAG-UUGUGCCGUCGCAGgG- -5' |
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19711 | 3' | -52.4 | NC_004686.1 | + | 42906 | 0.7 | 0.673667 |
Target: 5'- -aAUAUGGcgUCGACACGuGCGGCuUCUCa -3' miRNA: 3'- ccUAUACC--AGUUGUGC-CGUCGcAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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