miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19714 5' -55.1 NC_004686.1 + 49274 0.66 0.729929
Target:  5'- aGCGcGCGGCuGAAGU--ACGCGCUUg- -3'
miRNA:   3'- -UGCaCGCUG-CUUCGcuUGCGCGAGuu -5'
19714 5' -55.1 NC_004686.1 + 18998 0.66 0.729929
Target:  5'- gACGaucGCGAagcCGAagugGGCGAACGCGUUUGAc -3'
miRNA:   3'- -UGCa--CGCU---GCU----UCGCUUGCGCGAGUU- -5'
19714 5' -55.1 NC_004686.1 + 17831 0.66 0.729929
Target:  5'- cGCG-GCGAUGuGGUGGAUGCGCc--- -3'
miRNA:   3'- -UGCaCGCUGCuUCGCUUGCGCGaguu -5'
19714 5' -55.1 NC_004686.1 + 47663 0.66 0.71921
Target:  5'- uUGUGCGGcCGAAgGUGAAUGCGUUg-- -3'
miRNA:   3'- uGCACGCU-GCUU-CGCUUGCGCGAguu -5'
19714 5' -55.1 NC_004686.1 + 48982 0.66 0.697521
Target:  5'- cGCGaggGCGACGuuGUaGAGCGCGCgaaagCAGc -3'
miRNA:   3'- -UGCa--CGCUGCuuCG-CUUGCGCGa----GUU- -5'
19714 5' -55.1 NC_004686.1 + 31204 0.66 0.684378
Target:  5'- uCGUGCGGCcgucgucgcuGCGGGCGCGCa--- -3'
miRNA:   3'- uGCACGCUGcuu-------CGCUUGCGCGaguu -5'
19714 5' -55.1 NC_004686.1 + 45989 0.68 0.609071
Target:  5'- gUGUGCGGCGGAaaCGGAUGCGCa--- -3'
miRNA:   3'- uGCACGCUGCUUc-GCUUGCGCGaguu -5'
19714 5' -55.1 NC_004686.1 + 5038 0.68 0.596895
Target:  5'- ---cGCGGCGAggucgucGGUGAAgGUGCUCAGa -3'
miRNA:   3'- ugcaCGCUGCU-------UCGCUUgCGCGAGUU- -5'
19714 5' -55.1 NC_004686.1 + 39076 0.68 0.575957
Target:  5'- aGCGUGCGGCGAAuGCac-UGCGgUCAGu -3'
miRNA:   3'- -UGCACGCUGCUU-CGcuuGCGCgAGUU- -5'
19714 5' -55.1 NC_004686.1 + 51115 0.7 0.479956
Target:  5'- gGCG-GUGACgGGAGCGAACGuCGCcgUCGAc -3'
miRNA:   3'- -UGCaCGCUG-CUUCGCUUGC-GCG--AGUU- -5'
19714 5' -55.1 NC_004686.1 + 21848 0.7 0.45965
Target:  5'- cGCGgGCGGCGGcucCGGACGgCGCUCGAa -3'
miRNA:   3'- -UGCaCGCUGCUuc-GCUUGC-GCGAGUU- -5'
19714 5' -55.1 NC_004686.1 + 51515 0.71 0.410991
Target:  5'- gUGgggGCGugGAucgcGGCGuggGACGCGCUCAAc -3'
miRNA:   3'- uGCa--CGCugCU----UCGC---UUGCGCGAGUU- -5'
19714 5' -55.1 NC_004686.1 + 49317 1.05 0.001709
Target:  5'- gACGUGCGACGAAGCGAACGCGCUCAAc -3'
miRNA:   3'- -UGCACGCUGCUUCGCUUGCGCGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.