miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19717 5' -58.4 NC_004686.1 + 1615 0.68 0.454046
Target:  5'- -cGCGGGACCAgUGGAacaacCUGGCgGCGg -3'
miRNA:   3'- gaCGCUUUGGUgGCCUa----GGCCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 3299 0.69 0.363514
Target:  5'- -gGCGAGccaugcGCCGCauGAUCCuGGCCGCc -3'
miRNA:   3'- gaCGCUU------UGGUGgcCUAGG-CCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 3730 0.67 0.483512
Target:  5'- -aGCGAAGCCGCCauGGcggCGGCgGCGg -3'
miRNA:   3'- gaCGCUUUGGUGG--CCuagGCCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 3948 0.69 0.394644
Target:  5'- -gGCGAacuacacGAUCACCGGAucagcccaggaggaUCCgcaGGCCGCGg -3'
miRNA:   3'- gaCGCU-------UUGGUGGCCU--------------AGG---CCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 5751 0.7 0.34697
Target:  5'- -gGgGAAcauGCgGCCGGAUCCGGUgguuuCGCAg -3'
miRNA:   3'- gaCgCUU---UGgUGGCCUAGGCCG-----GCGU- -5'
19717 5' -58.4 NC_004686.1 + 8193 0.7 0.34697
Target:  5'- cCUGCGAAggGCUcgcauCCGGAgaacCCGGCCgGCGu -3'
miRNA:   3'- -GACGCUU--UGGu----GGCCUa---GGCCGG-CGU- -5'
19717 5' -58.4 NC_004686.1 + 8885 0.68 0.425582
Target:  5'- gCUGCgGAAACCA-CGGGUCguaGGCgGCGc -3'
miRNA:   3'- -GACG-CUUUGGUgGCCUAGg--CCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 12026 0.69 0.398207
Target:  5'- uUGUGAGAUCACCcaugcccGGUCCGGCacCGCGu -3'
miRNA:   3'- gACGCUUUGGUGGc------CUAGGCCG--GCGU- -5'
19717 5' -58.4 NC_004686.1 + 12105 0.66 0.524159
Target:  5'- gCUGCG--GCUACCGcGGcUUCGGCUGCc -3'
miRNA:   3'- -GACGCuuUGGUGGC-CU-AGGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 12466 0.67 0.473585
Target:  5'- aUGgGgcACCGCCGGGaCCGGgggcgccuacccCCGCAc -3'
miRNA:   3'- gACgCuuUGGUGGCCUaGGCC------------GGCGU- -5'
19717 5' -58.4 NC_004686.1 + 14043 0.66 0.566043
Target:  5'- uUGCGGugcCCGCUGG-UCgGGCCGg- -3'
miRNA:   3'- gACGCUuu-GGUGGCCuAGgCCGGCgu -5'
19717 5' -58.4 NC_004686.1 + 16800 0.77 0.117335
Target:  5'- uCUGCGAAgcACCAUCGGccagcAUCCGcGCCGCu -3'
miRNA:   3'- -GACGCUU--UGGUGGCC-----UAGGC-CGGCGu -5'
19717 5' -58.4 NC_004686.1 + 19549 0.66 0.576659
Target:  5'- -cGcCGAcGCCGCCGGAaaCGGuuGUg -3'
miRNA:   3'- gaC-GCUuUGGUGGCCUagGCCggCGu -5'
19717 5' -58.4 NC_004686.1 + 22165 0.71 0.286276
Target:  5'- cCU-CGAuGCCACUGGuuuuUCCGGCgGCAa -3'
miRNA:   3'- -GAcGCUuUGGUGGCCu---AGGCCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 23712 0.71 0.308005
Target:  5'- gUGUGGAccGCUuCCGGGUCCGGgaucaCCGCAc -3'
miRNA:   3'- gACGCUU--UGGuGGCCUAGGCC-----GGCGU- -5'
19717 5' -58.4 NC_004686.1 + 24288 0.7 0.355174
Target:  5'- gUGCGAcAACCA-CGGAaCCGGCCacgGCAu -3'
miRNA:   3'- gACGCU-UUGGUgGCCUaGGCCGG---CGU- -5'
19717 5' -58.4 NC_004686.1 + 24444 0.66 0.566043
Target:  5'- -cGUGAAGCgCugCGGcggCGGCCGCc -3'
miRNA:   3'- gaCGCUUUG-GugGCCuagGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 29143 0.7 0.330971
Target:  5'- -gGUGAAGaugaucggcuUCACCGGAUCCGGgCGUu -3'
miRNA:   3'- gaCGCUUU----------GGUGGCCUAGGCCgGCGu -5'
19717 5' -58.4 NC_004686.1 + 30290 0.67 0.493538
Target:  5'- -cGCGAuggaACCGGAUCUcgccaguagGGCCGUAa -3'
miRNA:   3'- gaCGCUuuggUGGCCUAGG---------CCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 30362 0.71 0.272473
Target:  5'- -gGCGAAACCGuuGaucuGUcCCGGCCGCGg -3'
miRNA:   3'- gaCGCUUUGGUggCc---UA-GGCCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.