miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19717 5' -58.4 NC_004686.1 + 50437 1.08 0.000646
Target:  5'- uCUGCGAAACCACCGGAUCCGGCCGCAu -3'
miRNA:   3'- -GACGCUUUGGUGGCCUAGGCCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 3730 0.67 0.483512
Target:  5'- -aGCGAAGCCGCCauGGcggCGGCgGCGg -3'
miRNA:   3'- gaCGCUUUGGUGG--CCuagGCCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 30290 0.67 0.493538
Target:  5'- -cGCGAuggaACCGGAUCUcgccaguagGGCCGUAa -3'
miRNA:   3'- gaCGCUuuggUGGCCUAGG---------CCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 12105 0.66 0.524159
Target:  5'- gCUGCG--GCUACCGcGGcUUCGGCUGCc -3'
miRNA:   3'- -GACGCuuUGGUGGC-CU-AGGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 46190 0.66 0.564984
Target:  5'- -gGUGGAauguccuACCugCGGAUCUGaGCCGg- -3'
miRNA:   3'- gaCGCUU-------UGGugGCCUAGGC-CGGCgu -5'
19717 5' -58.4 NC_004686.1 + 14043 0.66 0.566043
Target:  5'- uUGCGGugcCCGCUGG-UCgGGCCGg- -3'
miRNA:   3'- gACGCUuu-GGUGGCCuAGgCCGGCgu -5'
19717 5' -58.4 NC_004686.1 + 24444 0.66 0.566043
Target:  5'- -cGUGAAGCgCugCGGcggCGGCCGCc -3'
miRNA:   3'- gaCGCUUUG-GugGCCuagGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 43698 0.66 0.566043
Target:  5'- uUGCGGAuccguUCGCCGGuUCCGGUucgacguugguCGCGg -3'
miRNA:   3'- gACGCUUu----GGUGGCCuAGGCCG-----------GCGU- -5'
19717 5' -58.4 NC_004686.1 + 19549 0.66 0.576659
Target:  5'- -cGcCGAcGCCGCCGGAaaCGGuuGUg -3'
miRNA:   3'- gaC-GCUuUGGUGGCCUagGCCggCGu -5'
19717 5' -58.4 NC_004686.1 + 12466 0.67 0.473585
Target:  5'- aUGgGgcACCGCCGGGaCCGGgggcgccuacccCCGCAc -3'
miRNA:   3'- gACgCuuUGGUGGCCUaGGCC------------GGCGU- -5'
19717 5' -58.4 NC_004686.1 + 48902 0.67 0.463762
Target:  5'- -cGCGGAcGgCGCaCGGaAUCUGGCCGCc -3'
miRNA:   3'- gaCGCUU-UgGUG-GCC-UAGGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 1615 0.68 0.454046
Target:  5'- -cGCGGGACCAgUGGAacaacCUGGCgGCGg -3'
miRNA:   3'- gaCGCUUUGGUgGCCUa----GGCCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 33840 0.75 0.170425
Target:  5'- gCUGCGAcggcGACUuggGCCGGGgugacgcgaaggCCGGCCGCGa -3'
miRNA:   3'- -GACGCU----UUGG---UGGCCUa-----------GGCCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 22165 0.71 0.286276
Target:  5'- cCU-CGAuGCCACUGGuuuuUCCGGCgGCAa -3'
miRNA:   3'- -GAcGCUuUGGUGGCCu---AGGCCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 23712 0.71 0.308005
Target:  5'- gUGUGGAccGCUuCCGGGUCCGGgaucaCCGCAc -3'
miRNA:   3'- gACGCUU--UGGuGGCCUAGGCC-----GGCGU- -5'
19717 5' -58.4 NC_004686.1 + 53367 0.71 0.308005
Target:  5'- -aGCGuugcuGACgCACCGGAUCCGGCa--- -3'
miRNA:   3'- gaCGCu----UUG-GUGGCCUAGGCCGgcgu -5'
19717 5' -58.4 NC_004686.1 + 8193 0.7 0.34697
Target:  5'- cCUGCGAAggGCUcgcauCCGGAgaacCCGGCCgGCGu -3'
miRNA:   3'- -GACGCUU--UGGu----GGCCUa---GGCCGG-CGU- -5'
19717 5' -58.4 NC_004686.1 + 24288 0.7 0.355174
Target:  5'- gUGCGAcAACCA-CGGAaCCGGCCacgGCAu -3'
miRNA:   3'- gACGCU-UUGGUgGCCUaGGCCGG---CGU- -5'
19717 5' -58.4 NC_004686.1 + 44382 0.69 0.37973
Target:  5'- uUGCGGAuccguucGCCGguuCCGGAUCCacguuGGUCGCGg -3'
miRNA:   3'- gACGCUU-------UGGU---GGCCUAGG-----CCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 3948 0.69 0.394644
Target:  5'- -gGCGAacuacacGAUCACCGGAucagcccaggaggaUCCgcaGGCCGCGg -3'
miRNA:   3'- gaCGCU-------UUGGUGGCCU--------------AGG---CCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.