miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19719 5' -58.3 NC_004686.1 + 50819 1.1 0.000463
Target:  5'- uGCCCCGACCGCUGGACUUCAACGCCGa -3'
miRNA:   3'- -CGGGGCUGGCGACCUGAAGUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 56072 0.8 0.082587
Target:  5'- aCCCgCGACCGgUGGACccgCGACGCCGu -3'
miRNA:   3'- cGGG-GCUGGCgACCUGaa-GUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 26370 0.74 0.191059
Target:  5'- cGCCCCGACCuGCccaaGGGCUaCGAcccCGCCGa -3'
miRNA:   3'- -CGGGGCUGG-CGa---CCUGAaGUU---GCGGC- -5'
19719 5' -58.3 NC_004686.1 + 2238 0.7 0.346639
Target:  5'- cGCCCUGAUCaaUGGGCUUCucGCGCa- -3'
miRNA:   3'- -CGGGGCUGGcgACCUGAAGu-UGCGgc -5'
19719 5' -58.3 NC_004686.1 + 30378 0.7 0.354781
Target:  5'- uGUCCCGGCCGC-GGGC--CGGCGCa- -3'
miRNA:   3'- -CGGGGCUGGCGaCCUGaaGUUGCGgc -5'
19719 5' -58.3 NC_004686.1 + 51125 0.7 0.354781
Target:  5'- aGCCUgGACUGUggUGGGuagaggUCAACGCCGa -3'
miRNA:   3'- -CGGGgCUGGCG--ACCUga----AGUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 16735 0.7 0.363056
Target:  5'- aCCCUGGCCGC-GGAaau--GCGCCGa -3'
miRNA:   3'- cGGGGCUGGCGaCCUgaaguUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 42540 0.69 0.380004
Target:  5'- aGCCCCG-CCGUgucccGGAUUU-GACGCUGg -3'
miRNA:   3'- -CGGGGCuGGCGa----CCUGAAgUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 12119 0.69 0.406401
Target:  5'- gGCUUCGGCUGCcgcaacggcGGGCaguUUCGGCGCCGg -3'
miRNA:   3'- -CGGGGCUGGCGa--------CCUG---AAGUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 46454 0.69 0.419106
Target:  5'- -gCCCGAaaGCggugcccuucaccGACUUCAACGCCGa -3'
miRNA:   3'- cgGGGCUggCGac-----------CUGAAGUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 5040 0.69 0.424625
Target:  5'- -aCCCGACauCGCUGGGCaauucaUCGGCGuuGa -3'
miRNA:   3'- cgGGGCUG--GCGACCUGa-----AGUUGCggC- -5'
19719 5' -58.3 NC_004686.1 + 51520 0.68 0.443329
Target:  5'- gGCgUgGAUCGCggcgugGGACgcgcUCAACGCCGc -3'
miRNA:   3'- -CGgGgCUGGCGa-----CCUGa---AGUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 54666 0.68 0.452853
Target:  5'- cGgCCCGGCUGCauucUGGugUUCGACGaguaccaCGg -3'
miRNA:   3'- -CgGGGCUGGCG----ACCugAAGUUGCg------GC- -5'
19719 5' -58.3 NC_004686.1 + 33140 0.68 0.472229
Target:  5'- uGCCUauGCCGCcgGGGCUagccacCAACGCCa -3'
miRNA:   3'- -CGGGgcUGGCGa-CCUGAa-----GUUGCGGc -5'
19719 5' -58.3 NC_004686.1 + 36373 0.67 0.492015
Target:  5'- -aCUCGACgCGCUgccGGACUUCGuCGUCGu -3'
miRNA:   3'- cgGGGCUG-GCGA---CCUGAAGUuGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 17296 0.67 0.502051
Target:  5'- cGCCCCacacacccaACuCGUUGuGCUUCAACGCCc -3'
miRNA:   3'- -CGGGGc--------UG-GCGACcUGAAGUUGCGGc -5'
19719 5' -58.3 NC_004686.1 + 24529 0.67 0.511159
Target:  5'- gGCCCCGcCgGCUGGAacgcaacaguccuCUUCAcCGCa- -3'
miRNA:   3'- -CGGGGCuGgCGACCU-------------GAAGUuGCGgc -5'
19719 5' -58.3 NC_004686.1 + 23454 0.67 0.512175
Target:  5'- aCUCCauuGGCCGCUGGAaCUUgGACccuGCCGu -3'
miRNA:   3'- cGGGG---CUGGCGACCU-GAAgUUG---CGGC- -5'
19719 5' -58.3 NC_004686.1 + 24336 0.67 0.522383
Target:  5'- cGCCaCCGGCaGCggcGGACaa-GGCGCCGu -3'
miRNA:   3'- -CGG-GGCUGgCGa--CCUGaagUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 22136 0.66 0.553447
Target:  5'- gGCCUCGgcggcACCGCUGucaucaccGGCcUCGAUGCCa -3'
miRNA:   3'- -CGGGGC-----UGGCGAC--------CUGaAGUUGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.