miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19719 5' -58.3 NC_004686.1 + 599 0.66 0.585039
Target:  5'- cGCaCCCGaggguGCCGUcgucgaUGGACagguagUCAGCGUCGa -3'
miRNA:   3'- -CG-GGGC-----UGGCG------ACCUGa-----AGUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 2238 0.7 0.346639
Target:  5'- cGCCCUGAUCaaUGGGCUUCucGCGCa- -3'
miRNA:   3'- -CGGGGCUGGcgACCUGAAGu-UGCGgc -5'
19719 5' -58.3 NC_004686.1 + 5040 0.69 0.424625
Target:  5'- -aCCCGACauCGCUGGGCaauucaUCGGCGuuGa -3'
miRNA:   3'- cgGGGCUG--GCGACCUGa-----AGUUGCggC- -5'
19719 5' -58.3 NC_004686.1 + 7327 0.66 0.595654
Target:  5'- aGCCCUGAgUGCgaaccUGGAUauUUCcGCGCCc -3'
miRNA:   3'- -CGGGGCUgGCG-----ACCUG--AAGuUGCGGc -5'
19719 5' -58.3 NC_004686.1 + 7478 0.66 0.595654
Target:  5'- gGCUUCGACCGCgugguauuccUGGGCcUgAACgGCCGc -3'
miRNA:   3'- -CGGGGCUGGCG----------ACCUGaAgUUG-CGGC- -5'
19719 5' -58.3 NC_004686.1 + 9162 0.66 0.553447
Target:  5'- aGCCgCCGGCCGU--GAgaUCGGuCGCCGa -3'
miRNA:   3'- -CGG-GGCUGGCGacCUgaAGUU-GCGGC- -5'
19719 5' -58.3 NC_004686.1 + 12119 0.69 0.406401
Target:  5'- gGCUUCGGCUGCcgcaacggcGGGCaguUUCGGCGCCGg -3'
miRNA:   3'- -CGGGGCUGGCGa--------CCUG---AAGUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 13399 0.66 0.574461
Target:  5'- aCCCCGacGCUGCcGGACUUCu-CGUgGg -3'
miRNA:   3'- cGGGGC--UGGCGaCCUGAAGuuGCGgC- -5'
19719 5' -58.3 NC_004686.1 + 15569 0.66 0.585039
Target:  5'- uUCCCGGCCGCccUGGuCgaacguggCGGCGUCGc -3'
miRNA:   3'- cGGGGCUGGCG--ACCuGaa------GUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 16735 0.7 0.363056
Target:  5'- aCCCUGGCCGC-GGAaau--GCGCCGa -3'
miRNA:   3'- cGGGGCUGGCGaCCUgaaguUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 17296 0.67 0.502051
Target:  5'- cGCCCCacacacccaACuCGUUGuGCUUCAACGCCc -3'
miRNA:   3'- -CGGGGc--------UG-GCGACcUGAAGUUGCGGc -5'
19719 5' -58.3 NC_004686.1 + 19339 0.66 0.563929
Target:  5'- -aCCCGgaACCGUUGGAgUaCAACGgCGa -3'
miRNA:   3'- cgGGGC--UGGCGACCUgAaGUUGCgGC- -5'
19719 5' -58.3 NC_004686.1 + 21169 0.66 0.574461
Target:  5'- uGUUCCGcGCCGCggGGGCUggcacugguUCAGCGCa- -3'
miRNA:   3'- -CGGGGC-UGGCGa-CCUGA---------AGUUGCGgc -5'
19719 5' -58.3 NC_004686.1 + 22136 0.66 0.553447
Target:  5'- gGCCUCGgcggcACCGCUGucaucaccGGCcUCGAUGCCa -3'
miRNA:   3'- -CGGGGC-----UGGCGAC--------CUGaAGUUGCGGc -5'
19719 5' -58.3 NC_004686.1 + 23454 0.67 0.512175
Target:  5'- aCUCCauuGGCCGCUGGAaCUUgGACccuGCCGu -3'
miRNA:   3'- cGGGG---CUGGCGACCU-GAAgUUG---CGGC- -5'
19719 5' -58.3 NC_004686.1 + 24336 0.67 0.522383
Target:  5'- cGCCaCCGGCaGCggcGGACaa-GGCGCCGu -3'
miRNA:   3'- -CGG-GGCUGgCGa--CCUGaagUUGCGGC- -5'
19719 5' -58.3 NC_004686.1 + 24529 0.67 0.511159
Target:  5'- gGCCCCGcCgGCUGGAacgcaacaguccuCUUCAcCGCa- -3'
miRNA:   3'- -CGGGGCuGgCGACCU-------------GAAGUuGCGgc -5'
19719 5' -58.3 NC_004686.1 + 26370 0.74 0.191059
Target:  5'- cGCCCCGACCuGCccaaGGGCUaCGAcccCGCCGa -3'
miRNA:   3'- -CGGGGCUGG-CGa---CCUGAaGUU---GCGGC- -5'
19719 5' -58.3 NC_004686.1 + 30378 0.7 0.354781
Target:  5'- uGUCCCGGCCGC-GGGC--CGGCGCa- -3'
miRNA:   3'- -CGGGGCUGGCGaCCUGaaGUUGCGgc -5'
19719 5' -58.3 NC_004686.1 + 31041 0.66 0.574461
Target:  5'- aGCCuuGGCCGC--GACcaCAgcACGCCGa -3'
miRNA:   3'- -CGGggCUGGCGacCUGaaGU--UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.