miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19721 3' -55.7 NC_004686.1 + 41714 0.66 0.766581
Target:  5'- gCCUGGCaGGUAgCGGGUGcaCUGCa -3'
miRNA:   3'- gGGGCUGcUCAUaGCCCGCaaGACGg -5'
19721 3' -55.7 NC_004686.1 + 47295 0.66 0.756588
Target:  5'- uCCgCgGGCGAGgagGUCGGcGCGgaugGCCc -3'
miRNA:   3'- -GG-GgCUGCUCa--UAGCC-CGCaagaCGG- -5'
19721 3' -55.7 NC_004686.1 + 47639 0.66 0.756588
Target:  5'- aUCCGACaccgGAGccgCGGGUGUUUgugcgGCCg -3'
miRNA:   3'- gGGGCUG----CUCauaGCCCGCAAGa----CGG- -5'
19721 3' -55.7 NC_004686.1 + 15069 0.66 0.736247
Target:  5'- uCCCUGAUG-GUGUugCGGGCcggGUUCUGg- -3'
miRNA:   3'- -GGGGCUGCuCAUA--GCCCG---CAAGACgg -5'
19721 3' -55.7 NC_004686.1 + 28781 0.66 0.712367
Target:  5'- aCCCCGGCGgaagucggcgagccGGUAgugcagCGGcGCGUUCacggGCa -3'
miRNA:   3'- -GGGGCUGC--------------UCAUa-----GCC-CGCAAGa---CGg -5'
19721 3' -55.7 NC_004686.1 + 42806 0.67 0.705014
Target:  5'- gUCCGGC-AGcGUCGGG-GUUCcGCCg -3'
miRNA:   3'- gGGGCUGcUCaUAGCCCgCAAGaCGG- -5'
19721 3' -55.7 NC_004686.1 + 8812 0.67 0.673168
Target:  5'- gCCaaGGcCGAGUgggAUCGGGUGU-CUGCg -3'
miRNA:   3'- -GGggCU-GCUCA---UAGCCCGCAaGACGg -5'
19721 3' -55.7 NC_004686.1 + 3358 0.67 0.66996
Target:  5'- uCCCCGAUGAGUggaaGUCGaucgaugcgaaguGGCGggauccgcgguaUCUGUCg -3'
miRNA:   3'- -GGGGCUGCUCA----UAGC-------------CCGCa-----------AGACGG- -5'
19721 3' -55.7 NC_004686.1 + 24430 0.67 0.662465
Target:  5'- -aCUGACGAuaGUCGGGCGUg--GCg -3'
miRNA:   3'- ggGGCUGCUcaUAGCCCGCAagaCGg -5'
19721 3' -55.7 NC_004686.1 + 44368 0.68 0.651735
Target:  5'- aCCCGACGGuGUGguugCGGaucCGUUC-GCCg -3'
miRNA:   3'- gGGGCUGCU-CAUa---GCCc--GCAAGaCGG- -5'
19721 3' -55.7 NC_004686.1 + 28783 0.68 0.639912
Target:  5'- aUgCGGCGGGUGUCGccgcgguguuguuGGUGUUcCUGCUg -3'
miRNA:   3'- gGgGCUGCUCAUAGC-------------CCGCAA-GACGG- -5'
19721 3' -55.7 NC_004686.1 + 42002 0.68 0.630233
Target:  5'- gCCgCCGACGAGUAcgGGGCaaUCccaggUGCCc -3'
miRNA:   3'- -GG-GGCUGCUCAUagCCCGcaAG-----ACGG- -5'
19721 3' -55.7 NC_004686.1 + 50183 0.68 0.61948
Target:  5'- uUCgCGGCGAuGUcAUCGGGCaggUCUGCg -3'
miRNA:   3'- -GGgGCUGCU-CA-UAGCCCGca-AGACGg -5'
19721 3' -55.7 NC_004686.1 + 43419 0.68 0.61948
Target:  5'- cCCCUGAUGAGUcAUCGcuucGCGgcgCUGCa -3'
miRNA:   3'- -GGGGCUGCUCA-UAGCc---CGCaa-GACGg -5'
19721 3' -55.7 NC_004686.1 + 13447 0.68 0.608737
Target:  5'- uCCCCGAUGGGgaaggaugCGGcGCGgauggUGCCg -3'
miRNA:   3'- -GGGGCUGCUCaua-----GCC-CGCaag--ACGG- -5'
19721 3' -55.7 NC_004686.1 + 46801 0.7 0.524159
Target:  5'- uUCCCGAUGgaGGUGUUGaGGU--UCUGCCc -3'
miRNA:   3'- -GGGGCUGC--UCAUAGC-CCGcaAGACGG- -5'
19721 3' -55.7 NC_004686.1 + 4571 0.71 0.463762
Target:  5'- aCgUCGGCGAGg--UGGGCGUagaugUCUGCUu -3'
miRNA:   3'- -GgGGCUGCUCauaGCCCGCA-----AGACGG- -5'
19721 3' -55.7 NC_004686.1 + 23929 0.71 0.434953
Target:  5'- aCCCGAgGuGUAUCGGGgUGUUCgaacGCg -3'
miRNA:   3'- gGGGCUgCuCAUAGCCC-GCAAGa---CGg -5'
19721 3' -55.7 NC_004686.1 + 18018 0.72 0.416332
Target:  5'- -gUCGACG-GUG-CGGGCGUUCaUGCUg -3'
miRNA:   3'- ggGGCUGCuCAUaGCCCGCAAG-ACGG- -5'
19721 3' -55.7 NC_004686.1 + 22680 0.72 0.413581
Target:  5'- -aCCGGCGGcagcguucaucgguGUAUCGGGCGgaCaGCCg -3'
miRNA:   3'- ggGGCUGCU--------------CAUAGCCCGCaaGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.