miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19721 5' -56.8 NC_004686.1 + 34181 0.66 0.657326
Target:  5'- -cGcCGUCgGCGCCguCCUUGCCGuCa -3'
miRNA:   3'- guCuGUAGaUGCGGguGGAGCGGCuG- -5'
19721 5' -56.8 NC_004686.1 + 14272 0.66 0.657326
Target:  5'- aGGACcgCUGCgGCCCACgauUUC-CCGGCc -3'
miRNA:   3'- gUCUGuaGAUG-CGGGUG---GAGcGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 17002 0.66 0.644254
Target:  5'- aGGACAcggccggUCaUGCGcCCCACCUcugcgccCGUCGGCa -3'
miRNA:   3'- gUCUGU-------AG-AUGC-GGGUGGA-------GCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 39196 0.66 0.635531
Target:  5'- ---cCAUgaUUACGCCgACC-CGCCGGCg -3'
miRNA:   3'- gucuGUA--GAUGCGGgUGGaGCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 46751 0.66 0.602838
Target:  5'- -cGGCGUCUGCaCCaGCCUUGgCGGCu -3'
miRNA:   3'- guCUGUAGAUGcGGgUGGAGCgGCUG- -5'
19721 5' -56.8 NC_004686.1 + 56011 0.67 0.581151
Target:  5'- -cGGCAccguCGCCCACC-CGcCCGGCa -3'
miRNA:   3'- guCUGUagauGCGGGUGGaGC-GGCUG- -5'
19721 5' -56.8 NC_004686.1 + 52592 0.67 0.581151
Target:  5'- --cGCAUCaccgACGCCCuccacaacguucGCCUCGCCcGCg -3'
miRNA:   3'- gucUGUAGa---UGCGGG------------UGGAGCGGcUG- -5'
19721 5' -56.8 NC_004686.1 + 38178 0.67 0.55963
Target:  5'- gCAG-CAUgaACGCCCGCaC-CGUCGACc -3'
miRNA:   3'- -GUCuGUAgaUGCGGGUG-GaGCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 22500 0.67 0.55963
Target:  5'- cCAGuucCGUCgUACGCCCA---CGCCGGCg -3'
miRNA:   3'- -GUCu--GUAG-AUGCGGGUggaGCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 53374 0.67 0.550016
Target:  5'- aCGGACGcuUCgGCGCaggcuuguacggcaaCACCUgCGCCGGCa -3'
miRNA:   3'- -GUCUGU--AGaUGCGg--------------GUGGA-GCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 36821 0.67 0.548951
Target:  5'- uGGGCAccuUCUgAUGCCCGCC-CGCCa-- -3'
miRNA:   3'- gUCUGU---AGA-UGCGGGUGGaGCGGcug -5'
19721 5' -56.8 NC_004686.1 + 15713 0.67 0.538336
Target:  5'- -cGACG-CUGCGCaaggaucgCCGCCU-GCCGGCa -3'
miRNA:   3'- guCUGUaGAUGCG--------GGUGGAgCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 55544 0.67 0.538336
Target:  5'- -cGGCAUCgaaaGCCacaACCUUGCCGGa -3'
miRNA:   3'- guCUGUAGaug-CGGg--UGGAGCGGCUg -5'
19721 5' -56.8 NC_004686.1 + 7110 0.68 0.496654
Target:  5'- -uGGCGUUUggcucGCGCUCucCCUCGCUGACc -3'
miRNA:   3'- guCUGUAGA-----UGCGGGu-GGAGCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 54833 0.69 0.476361
Target:  5'- aCGGACGcuUCUucaccgGCGCCaaaGCCUuaucaCGCCGGCg -3'
miRNA:   3'- -GUCUGU--AGA------UGCGGg--UGGA-----GCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 52545 0.69 0.44672
Target:  5'- aGGugAUCccaAUGCCCACCUuCGCC-ACa -3'
miRNA:   3'- gUCugUAGa--UGCGGGUGGA-GCGGcUG- -5'
19721 5' -56.8 NC_004686.1 + 41382 0.71 0.331401
Target:  5'- cCAGGCAUgCUGUGCCCGCCcaCGuuGACc -3'
miRNA:   3'- -GUCUGUA-GAUGCGGGUGGa-GCggCUG- -5'
19721 5' -56.8 NC_004686.1 + 10343 0.72 0.314187
Target:  5'- uCGGACAUCauagaagcuguCGCCgGCCUCGCUGGu -3'
miRNA:   3'- -GUCUGUAGau---------GCGGgUGGAGCGGCUg -5'
19721 5' -56.8 NC_004686.1 + 27063 0.74 0.226846
Target:  5'- uCAGACAUCcGCaagcgcgGCCCGCCgaCGCCGAUc -3'
miRNA:   3'- -GUCUGUAGaUG-------CGGGUGGa-GCGGCUG- -5'
19721 5' -56.8 NC_004686.1 + 51623 1.1 0.000646
Target:  5'- gCAGACAUCUACGCCCACCUCGCCGACg -3'
miRNA:   3'- -GUCUGUAGAUGCGGGUGGAGCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.